TannerDowhy/albacore-playbook:latest

$ singularity pull shub://TannerDowhy/albacore-playbook:latest

Singularity Recipe

BootStrap: debootstrap
OSVersion: xenial
MirrorURL: http://us.archive.ubuntu.com/ubuntu/

%post

    echo "deb http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-backports main restricted universe multiverse" | tee -a /etc/apt/sources.list
    echo "deb http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial main restricted" | tee -a /etc/apt/sources.list
    echo "deb http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial multiverse" | tee -a /etc/apt/sources.list
    echo "deb http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial universe" | tee -a /etc/apt/sources.list
    echo "deb http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-updates main restricted" | tee -a /etc/apt/sources.list
    echo "deb http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-updates multiverse" | tee -a /etc/apt/sources.list
    echo "deb http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-updates universe" | tee -a /etc/apt/sources.list
    echo "deb http://security.ubuntu.com/ubuntu xenial-security main restricted" | tee -a /etc/apt/sources.list
    echo "deb http://security.ubuntu.com/ubuntu xenial-security multiverse" | tee -a /etc/apt/sources.list
    echo "deb http://security.ubuntu.com/ubuntu xenial-security universe" | tee -a /etc/apt/sources.list
    echo "deb-src http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-backports main restricted universe multiverse" | tee -a /etc/apt/sources.list
    echo "deb-src http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial main restricted" | tee -a /etc/apt/sources.list
    echo "deb-src http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial multiverse" | tee -a /etc/apt/sources.list
    echo "deb-src http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial universe" | tee -a /etc/apt/sources.list
    echo "deb-src http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-updates main restricted" | tee -a /etc/apt/sources.list
    echo "deb-src http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-updates multiverse" | tee -a /etc/apt/sources.list
    echo "deb-src http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-updates universe" | tee -a /etc/apt/sources.list
    echo "deb-src http://security.ubuntu.com/ubuntu xenial-security main restricted" | tee -a /etc/apt/sources.list
    echo "deb-src http://security.ubuntu.com/ubuntu xenial-security multiverse" | tee -a /etc/apt/sources.list
    echo "deb-src http://security.ubuntu.com/ubuntu xenial-security universe" | tee -a /etc/apt/sources.list

    apt-get -y update

    apt-get -y install wget apt-transport-https python3 libboost-dev python3-pip python3-numpy python3-h5py

    wget -O ont_albacore-2.3.1-cp35-cp35m-manylinux1_x86_64.whl https://mirror.oxfordnanoportal.com/software/analysis/ont_albacore-2.3.1-cp35-cp35m-manylinux1_x86_64.whl
    pip3 install ont_albacore-2.3.1-cp35-cp35m-manylinux1_x86_64.whl

Collection


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Metrics

key value
id /containers/TannerDowhy-albacore-playbook-latest
collection name TannerDowhy/albacore-playbook
branch master
tag latest
commit 8f36fce131d2dc66de7bcc95b68ad6584c39741f
version (container hash) 52bf986d2dd6d8d7fddd485a31e35deb
build date 2018-08-28T03:21:34.930Z
size (MB) 1076
size (bytes) 451244063
SIF Download URL (please use pull with shub://)
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