TannerDowhy/ITS_pipeline_containerized:latest

$ singularity pull shub://TannerDowhy/ITS_pipeline_containerized:latest

Singularity Recipe

BootStrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/
Include: yum

%setup
    mkdir ${SINGULARITY_ROOTFS}/primer_removal ${SINGULARITY_ROOTFS}/primer_removal/output ${SINGULARITY_ROOTFS}/primer_removal/reports

%files
    ../software/primer_removal.py /primer_removal/primer_removal.py
    ../software/touch.sh /primer_removal/touch.sh
    ../software/run_primer.sh /primer_removal/run_primer.sh
    ../software/submit.sh /primer_removal/submit.sh

%post
    yum -y groupinstall "Development Tools"
    yum -y install zlib-devel
    yum -y install https://centos7.iuscommunity.org/ius-release.rpm
    yum -y update
    yum -y install python36u python36u-libs python36u-devel python36u-pip

    pip3.6 install cutadapt

Collection


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Metrics

key value
id /containers/TannerDowhy-ITS_pipeline_containerized-latest
collection name TannerDowhy/ITS_pipeline_containerized
branch master
tag latest
commit f82d0321e74d6b57715a31b40ed7bfa3f59222ef
version (container hash) ec47267665e575e5333327dcdfb484df
build date 2018-08-03T18:41:28.464Z
size (MB) 967
size (bytes) 306778143
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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