TannerDowhy/ITS_pipeline_containerized:latest
$ singularity pull shub://TannerDowhy/ITS_pipeline_containerized:latest
Singularity Recipe
BootStrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/
Include: yum
%setup
mkdir ${SINGULARITY_ROOTFS}/primer_removal ${SINGULARITY_ROOTFS}/primer_removal/output ${SINGULARITY_ROOTFS}/primer_removal/reports
%files
../software/primer_removal.py /primer_removal/primer_removal.py
../software/touch.sh /primer_removal/touch.sh
../software/run_primer.sh /primer_removal/run_primer.sh
../software/submit.sh /primer_removal/submit.sh
%post
yum -y groupinstall "Development Tools"
yum -y install zlib-devel
yum -y install https://centos7.iuscommunity.org/ius-release.rpm
yum -y update
yum -y install python36u python36u-libs python36u-devel python36u-pip
pip3.6 install cutadapt
Collection
- Name: TannerDowhy/ITS_pipeline_containerized
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/TannerDowhy-ITS_pipeline_containerized-latest |
collection name | TannerDowhy/ITS_pipeline_containerized |
branch | master |
tag | latest |
commit | f82d0321e74d6b57715a31b40ed7bfa3f59222ef |
version (container hash) | ec47267665e575e5333327dcdfb484df |
build date | 2018-08-03T18:41:28.464Z |
size (MB) | 967 |
size (bytes) | 306778143 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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