Sylvia-Liang/torch31:latest
$ singularity pull shub://Sylvia-Liang/torch31:latest
Singularity Recipe
Bootstrap: docker
From: marcchpc/pytorch_cuda9
%environment
# use bash as default shell
SHELL=/bin/bash
export SHELL
# add CUDA paths
CPATH="/usr/local/cuda/include:$CPATH"
PATH="/usr/local/cuda/bin:$PATH"
LD_LIBRARY_PATH="/usr/local/cuda/lib64:$LD_LIBRARY_PATH"
CUDA_HOME="/usr/local/cuda"
export CPATH PATH LD_LIBRARY_PATH CUDA_HOME
# make conda accessible
PATH=/opt/conda/envs/pytorch-py3.7/bin:$PATH
export PATH
%setup
# runs on host - the path to the image is $SINGULARITY_ROOTFS
%post
# post-setup script
# load environment variables
. /environment
# make environment file executable
chmod +x /environment
# default mount paths, files
mkdir /scratch /data /work-zfs
touch /usr/bin/nvidia-smi
# user requests (contact marcc-help@marcc.jhu.edu)
/opt/conda/bin/conda install opencv scikit-learn scikit-image scipy pandas
/opt/conda/bin/conda install -c anaconda numpy pytest flake8 tensorflow-tensorboard
/opt/conda/bin/conda install -c conda-forge tensorboardx tqdm protobuf onnx spectrum nibabel
# try a pip install
/opt/conda/bin/pip install torchtext
/opt/conda/bin/pip install -U spacy
/opt/conda/bin/pip install https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-2.1.0/en_core_web_sm-2.1.0.tar.gz
/opt/conda/bin/pip install https://github.com/explosion/spacy-models/releases/download/en_core_web_md-2.1.0/en_core_web_md-2.1.0.tar.gz
/opt/conda/bin/pip install https://github.com/explosion/spacy-models/releases/download/en_core_web_lg-2.1.0/en_core_web_lg-2.1.0.tar.gz
/opt/conda/bin/pip install nltk
/opt/conda/bin/pip install sparqlwrapper
/opt/conda/bin/pip install tqdm
/opt/conda/bin/conda install -c maciejkula -c pytorch spotlight=0.1.5
/opt/conda/bin/pip install inflect
/opt/conda/bin/pip install tagme
/opt/conda/bin/pip install gensim
/opt/conda/bin/pip install seaborn
/opt/conda/bin/pip install git+https://github.com/facebookresearch/fastText.git
%runscript
# executes with the singularity run command
# delete this section to use existing docker ENTRYPOINT command
%test
# test that script is a success
Collection
- Name: Sylvia-Liang/torch31
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/Sylvia-Liang-torch31-latest |
collection name | Sylvia-Liang/torch31 |
branch | master |
tag | latest |
commit | 6ea3057af51d8fc945eae04bfc067d1f233646a2 |
version (container hash) | 860e1da5de377548d48b447c1c777c0a |
build date | 2019-06-12T11:53:04.562Z |
size (MB) | 14562 |
size (bytes) | 8743022623 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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