SouthGreenPlatform/singularityRecipeFiles:7.12.def

$ singularity pull shub://SouthGreenPlatform/singularityRecipeFiles:7.12.def

Singularity Recipe

BootStrap: docker
From: ubuntu:18.04

%labels
Maintainer tando
base.image="ubuntu:18.04"
version="1"
software="bwa"
software.version="0.7.12"

%help
Being in the folder of the container
Launch the command: singularity run bwa-0.7.12.simg + arguments to use bwa 


%post
apt-get update
apt-get install -y build-essential wget gcc zlib1g-dev
mkdir -p /opt/sources/
cd /opt/sources/
wget https://github.com/lh3/bwa/archive/0.7.12.tar.gz
tar xvfz 0.7.12.tar.gz
cd bwa-0.7.12
make
cp -r /opt/sources/bwa-0.7.12 /usr/local/bwa-0.7.12
chmod +x -R /usr/local/bwa-0.7.12

%runscript
exec /usr/local/bwa-0.7.12/bwa "$@"

Collection


View on Datalad

Metrics

key value
id /containers/SouthGreenPlatform-singularityRecipeFiles-7.12.def
collection name SouthGreenPlatform/singularityRecipeFiles
branch master
tag 7.12.def
commit 2a9b759923502166114d4ce80a70362bd0087251
version (container hash) b5a18d2dbae31771957b707d4b846c4c54c47046c4761e71677d4d0b327791ce
build date 2021-04-04T09:13:23.440Z
size (MB) 109.5703125
size (bytes) 114892800
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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