Simontuk/pyscenic:latest
$ singularity pull shub://Simontuk/pyscenic:latest
Singularity Recipe
BootStrap: docker
From: python:3.7.4-slim
%files
./requirements_docker.txt /tmp/
%post
BUILDPKGS="build-essential apt-utils \
python3-dev libhdf5-dev libfreetype6-dev libtool \
m4 autoconf automake patch bison flex libpng-dev libopenblas-dev \
tcl-dev tk-dev libxml2-dev zlib1g-dev libffi-dev cmake"
apt-get update
apt-get install -y debconf locales && dpkg-reconfigure locales
apt-get install -y zlib1g hdf5-tools gfortran libgcc1 libstdc++6 musl \
libopenblas-base tcl tk libxml2 libffi6 less procps
apt-get install -y $BUILDPKGS
pip install --no-cache-dir -r /tmp/requirements_docker.txt
pip install --no-cache-dir --no-dependencies --upgrade pyscenic==0.9.18
pip install --no-cache-dir scanpy==1.4.4.post1
apt-get remove --purge -y $BUILDPKGS && \
rm -rf /var/lib/apt/lists/*
Collection
- Name: Simontuk/pyscenic
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/Simontuk-pyscenic-latest |
collection name | Simontuk/pyscenic |
branch | master |
tag | latest |
commit | 4b433c23c51f64472e99f86425d759fd7199ce14 |
version (container hash) | 57980fc249af605e4e37ca1447fee720 |
build date | 2021-04-19T17:18:31.654Z |
size (MB) | 1550.0 |
size (bytes) | 512151583 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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