ResearchIT/tofu2:v17
$ singularity pull shub://ResearchIT/tofu2:v17
Singularity Recipe
Bootstrap: docker
From: ubuntu
%environment
PATH=$PATH:/root/tofu2/pitchfork/bin:/root/tofu2/pitchfork/cDNA_Cupcake/sequence
LD_LIBRARY_PATH=/root/tofu2/pitchfork/lib:$LD_LIBRARY_PATH
export PATH
export LD_LIBRARY_PATH
%post
apt-get update && apt-get -y install git wget minimap python python-dev python-biopython python-setuptools graphviz gcc gfortran make pkg-config libjpeg-dev libfreetype6-dev python-networkx time
git clone https://github.com/PacificBiosciences/pitchfork.git
cd pitchfork
git checkout isoseq_sa5.0.0
cat settings.mk.example > settings.mk
make init
make isoseq-core
git clone https://github.com/Magdoll/cDNA_Cupcake.git
cd cDNA_Cupcake
git checkout -b tofu2 tofu2_v17
python setup.py build
python setup.py install
%runscript
exec echo "$@"
Collection
- Name: ResearchIT/tofu2
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/ResearchIT-tofu2-v17 |
collection name | ResearchIT/tofu2 |
branch | master |
tag | v17 |
commit | 4dba1b53dc1d5ae07b829e62e650de75f0a4df04 |
version (container hash) | 9863702e2125b56bfbb5f890b41d7b60 |
build date | 2018-01-11T17:30:50.108Z |
size (MB) | 6185 |
size (bytes) | 1573474335 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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