ResearchIT/qiime2:latest

$ singularity pull shub://ResearchIT/qiime2:latest

Singularity Recipe

Bootstrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/ 
Include: yum

%environment
PATH=/opt/conda/envs/qiime2-2018.2/bin:/opt/conda/bin:$PATH
export PATH

%post
yum update -y
yum  install -y @"Development Tools"
yum install -y git curl which python3 python3-devel vim htop wget tar bzip2 gzip lz4 lzma mesa-libGL mesa-libGLU
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/conda
export PATH=/opt/conda/bin:$PATH
conda install -y conda
conda update -y conda

wget https://data.qiime2.org/distro/core/qiime2-2018.2-py35-linux-conda.yml
conda env create -n qiime2-2018.2 --file qiime2-2018.2-py35-linux-conda.yml
rm qiime2-2018.2-py35-linux-conda.yml
source activate qiime2-2018.2

%runscript
exec qiime "$@"

Collection


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Metrics

key value
id /containers/ResearchIT-qiime2-latest
collection name ResearchIT/qiime2
branch master
tag latest
commit 1945772101c0bbeff0b46e2bc58072d0f6b14e6d
version (container hash) 67da376d3efd1ab56b318e914bef370d
build date 2021-03-16T17:50:31.943Z
size (MB) 7151
size (bytes) 3037179935
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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