ResearchIT/qiime2:2019.4

$ singularity pull shub://ResearchIT/qiime2:2019.4

Singularity Recipe

Bootstrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/ 
Include: yum

%environment
PATH=/opt/conda/bin:$PATH
export PATH
source activate qiime2-2019.4

%post
yum update -y
yum  install -y @"Development Tools"
yum install -y git curl which python3 python3-devel vim htop wget tar bzip2 gzip lz4 lzma mesa-libGL mesa-libGLU
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/conda
export PATH=/opt/conda/bin:$PATH
conda install -y conda
conda update -y conda
wget https://data.qiime2.org/distro/core/qiime2-2019.4-py36-linux-conda.yml
conda env create -n qiime2-2019.4 --file qiime2-2019.4-py36-linux-conda.yml

%runscript
exec qiime "$@"

Collection


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Metrics

key value
id /containers/ResearchIT-qiime2-2019.4
collection name ResearchIT/qiime2
branch master
tag 2019.4
commit 948e4faccebd289797564d1853dec6e70588ea1f
version (container hash) ab69ee8739ec34d3fa50768c9a458d13
build date 2019-08-09T20:07:38.422Z
size (MB) 7163
size (bytes) 3052785695
SIF Download URL (please use pull with shub://)
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Singularity Recipe Singularity Recipe on Datalad
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