ResearchIT/qiime2:2018.6

$ singularity pull shub://ResearchIT/qiime2:2018.6

Singularity Recipe

Bootstrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/ 
Include: yum

%environment
PATH=/opt/conda/bin:$PATH
export PATH
source activate qiime2-2018.6

%post
yum update -y
yum  install -y @"Development Tools"
yum install -y git curl which python3 python3-devel vim htop wget tar bzip2 gzip lz4 lzma mesa-libGL mesa-libGLU
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/conda
export PATH=/opt/conda/bin:$PATH
conda install -y conda
conda update -y conda
wget https://data.qiime2.org/distro/core/qiime2-2018.6-py35-linux-conda.yml
conda env create -n qiime2-2018.6 --file qiime2-2018.6-py35-linux-conda.yml

%runscript
exec qiime "$@"

Collection


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Metrics

key value
id /containers/ResearchIT-qiime2-2018.6
collection name ResearchIT/qiime2
branch master
tag 2018.6
commit 75c6fd84189dc7c306c0539d190370ca87b891c5
version (container hash) ef75c81b37725c63f6a32eb310055797
build date 2018-07-27T19:34:58.946Z
size (MB) 7313
size (bytes) 3115597855
SIF Download URL (please use pull with shub://)
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Singularity Recipe Singularity Recipe on Datalad
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