ResearchIT/qiime2:2018.2

$ singularity pull shub://ResearchIT/qiime2:2018.2

Singularity Recipe

Bootstrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/ 
Include: yum

%environment
PATH=/opt/conda/envs/qiime2-2018.2/bin:/opt/conda/bin:$PATH
export PATH

%post
yum update -y
yum  install -y @"Development Tools"
yum install -y git curl which python3 python3-devel vim htop wget tar bzip2 gzip lz4 lzma mesa-libGL mesa-libGLU
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/conda
export PATH=/opt/conda/bin:$PATH
conda install -y conda
conda update -y conda

wget https://data.qiime2.org/distro/core/qiime2-2018.2-py35-linux-conda.yml
conda env create -n qiime2-2018.2 --file qiime2-2018.2-py35-linux-conda.yml
rm qiime2-2018.2-py35-linux-conda.yml
source activate qiime2-2018.2

%runscript
exec qiime "$@"

Collection


View on Datalad

Metrics

key value
id /containers/ResearchIT-qiime2-2018.2
collection name ResearchIT/qiime2
branch master
tag 2018.2
commit 1945772101c0bbeff0b46e2bc58072d0f6b14e6d
version (container hash) bc1fcd3aad45858260d08f605eb7b4f7
build date 2018-07-27T19:34:58.938Z
size (MB) 7151
size (bytes) 3037175839
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.