ResearchIT/qiime2:2017.12

$ singularity pull shub://ResearchIT/qiime2:2017.12

Singularity Recipe

Bootstrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/ 
Include: yum

%environment
PATH=/opt/conda/envs/qiime2-2017.12/bin:/opt/conda/bin:$PATH
export PATH

%post
yum update -y
yum  install -y @"Development Tools"
yum install -y git curl which python3 python3-devel vim htop wget tar bzip2 gzip lz4 lzma mesa-libGL mesa-libGLU
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/conda
export PATH=/opt/conda/bin:$PATH
conda install -y conda
conda update -y conda

wget https://data.qiime2.org/distro/core/qiime2-2017.12-py35-linux-conda.yml
conda env create -n qiime2-2017.12 --file qiime2-2017.12-py35-linux-conda.yml
rm qiime2-2017.12-py35-linux-conda.yml
source activate qiime2-2017.12

%runscript
exec qiime "$@"

Collection


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Metrics

key value
id /containers/ResearchIT-qiime2-2017.12
collection name ResearchIT/qiime2
branch master
tag 2017.12
commit 1945772101c0bbeff0b46e2bc58072d0f6b14e6d
version (container hash) 10400c89865b113e2ee5bbcc92c2c09a
build date 2018-07-28T02:46:39.795Z
size (MB) 7139
size (bytes) 3035914271
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
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