ResearchIT/NMRPipe:212_64
$ singularity pull shub://ResearchIT/NMRPipe:212_64
Singularity Recipe
Bootstrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/
#MirrorURL: https://download.fedoraproject.org/pub/fedora/linux/releases/%{OSVERSION}/Everything/$basearch/os/
Include: yum
%environment
%post
yum update -y
yum install -y @"Development Tools"
yum install -y epel-release
yum install -y libgomp cmake3 vim glibc.i686 libgomp.i686 tcsh xterm wget curl unzip lzma gzip zstd lz4
yum install -y git gcc-c++ gcc xorg-x11-fonts-100dpi xorg-x11-fonts-ISO8859-1-100dpi xorg-x11-fonts-75dpi xorg-x11-fonts-ISO8859-1-75dpi libX11 libXext libX11 libXext.i686 xterm.i686 libXfont.i686
DEST=/opt/nmrpipe
if [ ! -d $DEST ];
then
mkdir $DEST
pushd $DEST
wget https://www.ibbr.umd.edu/nmrpipe/NMRPipeX.tZ
wget https://www.ibbr.umd.edu/nmrpipe/install.com
wget https://www.ibbr.umd.edu/nmrpipe/binval.com
wget https://www.ibbr.umd.edu/nmrpipe/s.tZ
wget https://www.ibbr.umd.edu/nmrpipe/dyn.tZ
wget https://www.ibbr.umd.edu/nmrpipe/talos.tZ
wget https://spin.niddk.nih.gov/bax/software/smile/plugin.smile.tZ
tcsh install.com +type linux212_64
rm -f *.com *.tZ
popd
fi
ls -la $DEST
cat << EOF > /etc/profile.d/nmrpipe.csh
setenv SHELL /usr/bin/tcsh
set prompt = '[nmrPipe %n@%m]$ '
if (-e /opt/nmrpipe/com/nmrInit.linux212_64.com) then
source /opt/nmrpipe/com/nmrInit.linux212_64.com
endif
if (-e /opt/nmrpipe/dynamo/com/dynInit.com) then
source /opt/nmrpipe/dynamo/com/dynInit.com
endif
EOF
%runscript
exec /usr/bin/tcsh
Collection
- Name: ResearchIT/NMRPipe
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/ResearchIT-NMRPipe-212_64 |
collection name | ResearchIT/NMRPipe |
branch | master |
tag | 212_64 |
commit | ec04622479931ba858000e11e9c1c90588e075e1 |
version (container hash) | bd9402deefcb994d868ed0bfc8146c48 |
build date | 2018-06-11T18:30:27.462Z |
size (MB) | 2349 |
size (bytes) | 735768607 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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