QuentinLetourneur/Let-it-bin:trimming

$ singularity pull shub://QuentinLetourneur/Let-it-bin:trimming

Singularity Recipe

Bootstrap: docker
From: ubuntu:16.04

%files
	bin/alienTrimmerPF8contaminants.fasta /home/

%post
    mkdir /pasteur
    apt -y update
    apt -y install wget build-essential gcj-jdk
    
	cd /home
    wget ftp://ftp.pasteur.fr/pub/gensoft/projects/AlienTrimmer/AlienTrimmer_0.4.0.tar.gz
    tar -xzf AlienTrimmer_0.4.0.tar.gz
    rm AlienTrimmer_0.4.0.tar.gz
    cd AlienTrimmer_0.4.0/src
	sed "s:-march=native::g" -i Makefile
    make
    mv AlienTrimmer /usr/local/bin/

Collection


View on Datalad

Metrics

key value
id /containers/QuentinLetourneur-Let-it-bin-trimming
collection name QuentinLetourneur/Let-it-bin
branch master
tag trimming
commit 4e03e7640366a8d25b3492994181c4d2e3e7bdf9
version (container hash) 0689e6c02658358fc829096e0acdeab9
build date 2019-12-06T17:28:44.738Z
size (MB) 560
size (bytes) 213307423
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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