QuentinLetourneur/Let-it-bin:metagen
$ singularity pull shub://QuentinLetourneur/Let-it-bin:metagen
Singularity Recipe
Bootstrap: docker
From: ubuntu:16.04
%setup
export LC_ALL=C
%files
bin/cluster_to_fasta.py /usr/local/bin
bin/fasta.py /usr/local/bin
%post
mkdir /pasteur
apt -y update
apt -y install wget build-essential python2.7
cd /home
wget https://cran.r-project.org/bin/linux/ubuntu/xenial/r-base-core_3.2.5-1xenial_amd64.deb
apt -y install ./r-base-core_3.2.5-1xenial_amd64.deb
R --vanilla -e """packages = c('Rcpp', 'MASS', 'mixtools', 'doParallel', 'foreach', 'seqinr', 'getopt')
install.packages(packages, dependencies=T, repo='http://cran.univ-paris1.fr/')"""
wget https://github.com/BioAlgs/MetaGen/archive/master.zip
unzip master.zip
rm master.zip
Collection
- Name: QuentinLetourneur/Let-it-bin
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/QuentinLetourneur-Let-it-bin-metagen |
collection name | QuentinLetourneur/Let-it-bin |
branch | master |
tag | metagen |
commit | 2555085d0243d0c6d982f056c8c37eefd6c392f3 |
version (container hash) | cb1c8be6d198e4a3f4c87f3044c6d04c |
build date | 2018-09-03T17:16:24.234Z |
size (MB) | 692 |
size (bytes) | 294723615 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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