QuentinLetourneur/Let-it-bin:metagen

$ singularity pull shub://QuentinLetourneur/Let-it-bin:metagen

Singularity Recipe

Bootstrap: docker
From: ubuntu:16.04

%setup
	export LC_ALL=C
	
%files
	bin/cluster_to_fasta.py /usr/local/bin
	bin/fasta.py /usr/local/bin

%post
    mkdir /pasteur
    apt -y update
    apt -y install wget build-essential python2.7
    
	cd /home
	wget https://cran.r-project.org/bin/linux/ubuntu/xenial/r-base-core_3.2.5-1xenial_amd64.deb
    apt -y install ./r-base-core_3.2.5-1xenial_amd64.deb
    
    R --vanilla -e """packages = c('Rcpp', 'MASS', 'mixtools', 'doParallel', 'foreach', 'seqinr', 'getopt')
    install.packages(packages, dependencies=T, repo='http://cran.univ-paris1.fr/')"""
    
    wget https://github.com/BioAlgs/MetaGen/archive/master.zip
    unzip master.zip
    rm master.zip

Collection


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Metrics

key value
id /containers/QuentinLetourneur-Let-it-bin-metagen
collection name QuentinLetourneur/Let-it-bin
branch master
tag metagen
commit 2555085d0243d0c6d982f056c8c37eefd6c392f3
version (container hash) cb1c8be6d198e4a3f4c87f3044c6d04c
build date 2018-09-03T17:16:24.234Z
size (MB) 692
size (bytes) 294723615
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
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