QuentinLetourneur/Let-it-bin:maxbin

$ singularity pull shub://QuentinLetourneur/Let-it-bin:maxbin

Singularity Recipe

Bootstrap: docker
From: ubuntu:16.04

%setup
    export LC_ALL=C

%post
    mkdir /pasteur
    apt -y update
    apt -y install wget gawk build-essential perl autoconf zip
    
	cd /home
    wget https://downloads.jbei.org/data/microbial_communities/MaxBin/getfile.php?MaxBin-2.2.3.tar.gz
    tar -xzf getfile.php?MaxBin-2.2.3.tar.gz
    rm getfile.php?MaxBin-2.2.3.tar.gz
    cd MaxBin-2.2.3/src
    make
    cd /home/MaxBin-2.2.3
    ./autobuild_auxiliary
    cd auxiliary/hmmer-3.1b1/
    make install
    cd ../idba-1.1.1/
    make install
    mv bin/idba_ud /usr/local/bin
    cd ../bowtie2-2.2.3
    find -mindepth 1 -maxdepth 1 -executable -exec mv {} /usr/local/bin/ \;
    cd ../FragGeneScan1.30
    find -mindepth 1 -maxdepth 1 -executable -exec mv {} /usr/local/bin/ \;
    cd /home/MaxBin-2.2.3
    mv setting heatmap.r marker.hmm bacar_marker.hmm run_MaxBin.pl src _getmarker.pl _getabund.pl _sepReads.pl /usr/local/bin/

Collection


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Metrics

key value
id /containers/QuentinLetourneur-Let-it-bin-maxbin
collection name QuentinLetourneur/Let-it-bin
branch master
tag maxbin
commit b2b9f90f7a7b03a450c02c4b8ffd68e2968d8854
version (container hash) 947698ceb363cf4867049ebe95495eb4
build date 2018-09-03T17:16:24.249Z
size (MB) 905
size (bytes) 329936927
SIF Download URL (please use pull with shub://)
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