QuentinLetourneur/Let-it-bin:maxbin
$ singularity pull shub://QuentinLetourneur/Let-it-bin:maxbin
Singularity Recipe
Bootstrap: docker
From: ubuntu:16.04
%setup
export LC_ALL=C
%post
mkdir /pasteur
apt -y update
apt -y install wget gawk build-essential perl autoconf zip
cd /home
wget https://downloads.jbei.org/data/microbial_communities/MaxBin/getfile.php?MaxBin-2.2.3.tar.gz
tar -xzf getfile.php?MaxBin-2.2.3.tar.gz
rm getfile.php?MaxBin-2.2.3.tar.gz
cd MaxBin-2.2.3/src
make
cd /home/MaxBin-2.2.3
./autobuild_auxiliary
cd auxiliary/hmmer-3.1b1/
make install
cd ../idba-1.1.1/
make install
mv bin/idba_ud /usr/local/bin
cd ../bowtie2-2.2.3
find -mindepth 1 -maxdepth 1 -executable -exec mv {} /usr/local/bin/ \;
cd ../FragGeneScan1.30
find -mindepth 1 -maxdepth 1 -executable -exec mv {} /usr/local/bin/ \;
cd /home/MaxBin-2.2.3
mv setting heatmap.r marker.hmm bacar_marker.hmm run_MaxBin.pl src _getmarker.pl _getabund.pl _sepReads.pl /usr/local/bin/
Collection
- Name: QuentinLetourneur/Let-it-bin
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/QuentinLetourneur-Let-it-bin-maxbin |
collection name | QuentinLetourneur/Let-it-bin |
branch | master |
tag | maxbin |
commit | b2b9f90f7a7b03a450c02c4b8ffd68e2968d8854 |
version (container hash) | 947698ceb363cf4867049ebe95495eb4 |
build date | 2018-09-03T17:16:24.249Z |
size (MB) | 905 |
size (bytes) | 329936927 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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