QuentinLetourneur/Let-it-bin:mapping_count
$ singularity pull shub://QuentinLetourneur/Let-it-bin:mapping_count
Singularity Recipe
Bootstrap: docker
From: ubuntu:16.04
%setup
export LC_ALL=C
%post
mkdir /pasteur
apt -y update
apt -y install python python-pip wget zip
pip install pysam
cd /home
wget https://github.com/BenLangmead/bowtie2/releases/download/v2.2.9/bowtie2-2.2.9-linux-x86_64.zip
unzip bowtie2-2.2.9-linux-x86_64.zip
rm bowtie2-2.2.9-linux-x86_64.zip
mv bowtie2-2.2.9/* /usr/local/bin/
wget https://gitlab.pasteur.fr/aghozlan/mbma_singularity/repository/master/archive.zip
unzip archive.zip
rm archive.zip
mv mbma_singularity-master-*/* /usr/local/bin
Collection
- Name: QuentinLetourneur/Let-it-bin
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/QuentinLetourneur-Let-it-bin-mapping_count |
collection name | QuentinLetourneur/Let-it-bin |
branch | master |
tag | mapping_count |
commit | 5a0216219f195463e23b85dc2dbd9e6afe15467a |
version (container hash) | 449e5d38d6b54d544b124fe49d681845 |
build date | 2018-09-03T17:16:24.256Z |
size (MB) | 702 |
size (bytes) | 320057375 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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