QuentinLetourneur/Let-it-bin:mapping_count

$ singularity pull shub://QuentinLetourneur/Let-it-bin:mapping_count

Singularity Recipe

Bootstrap: docker
From: ubuntu:16.04

%setup
    export LC_ALL=C

%post
    mkdir /pasteur
    apt -y update
    apt -y install python python-pip wget zip
    pip install pysam
    
	cd /home
    wget https://github.com/BenLangmead/bowtie2/releases/download/v2.2.9/bowtie2-2.2.9-linux-x86_64.zip
    unzip bowtie2-2.2.9-linux-x86_64.zip
    rm bowtie2-2.2.9-linux-x86_64.zip
    mv bowtie2-2.2.9/* /usr/local/bin/
    
    wget https://gitlab.pasteur.fr/aghozlan/mbma_singularity/repository/master/archive.zip
    unzip archive.zip
    rm archive.zip
    mv mbma_singularity-master-*/* /usr/local/bin

Collection


View on Datalad

Metrics

key value
id /containers/QuentinLetourneur-Let-it-bin-mapping_count
collection name QuentinLetourneur/Let-it-bin
branch master
tag mapping_count
commit 5a0216219f195463e23b85dc2dbd9e6afe15467a
version (container hash) 449e5d38d6b54d544b124fe49d681845
build date 2018-09-03T17:16:24.256Z
size (MB) 702
size (bytes) 320057375
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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