QuentinLetourneur/Let-it-bin:contigs_annotation
$ singularity pull shub://QuentinLetourneur/Let-it-bin:contigs_annotation
Singularity Recipe
Bootstrap: docker
From: ubuntu:16.04
%setup
export LC_ALL=C
%files
bin/ExtractAnnotation.py /usr/local/bin
bin/sum_contigs_length_per_annotation.R /usr/local/bin
%post
mkdir /pasteur
apt update
apt install -y wget build-essential python2.7 python-pip
pip install numpy
pip install cogent
cd /home
wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-x64-linux.tar.gz
tar -xzf ncbi-blast-2.2.31+-x64-linux.tar.gz
rm ncbi-blast-2.2.31+-x64-linux.tar.gz
mv ncbi-blast-2.2.31+/bin/* /usr/local/bin
wget https://cran.r-project.org/bin/linux/ubuntu/xenial/r-base-core_3.2.5-1xenial_amd64.deb
apt install -y ./r-base-core_3.2.5-1xenial_amd64.deb
rm r-base-core_3.2.5-1xenial_amd64.deb
R --vanilla -e 'install.packages("plyr", repo="http://mirror.ibcp.fr/pub/CRAN/")'
Collection
- Name: QuentinLetourneur/Let-it-bin
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/QuentinLetourneur-Let-it-bin-contigs_annotation |
collection name | QuentinLetourneur/Let-it-bin |
branch | master |
tag | contigs_annotation |
commit | 595828a19dfce3afde08afd9d4583b1e076a539f |
version (container hash) | e9a7187ad16aafe59fcf574b0324d167 |
build date | 2018-09-02T22:05:36.535Z |
size (MB) | 1354 |
size (bytes) | 528773151 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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