QuentinLetourneur/Let-it-bin:contigs_annotation

$ singularity pull shub://QuentinLetourneur/Let-it-bin:contigs_annotation

Singularity Recipe

Bootstrap: docker
From: ubuntu:16.04

%setup
    export LC_ALL=C

%files
    bin/ExtractAnnotation.py /usr/local/bin
    bin/sum_contigs_length_per_annotation.R /usr/local/bin

%post
    mkdir /pasteur
    apt update
    apt install -y wget build-essential python2.7 python-pip
    pip install numpy
    pip install cogent
    
    cd /home    
    wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-x64-linux.tar.gz
    tar -xzf ncbi-blast-2.2.31+-x64-linux.tar.gz
    rm ncbi-blast-2.2.31+-x64-linux.tar.gz
    mv ncbi-blast-2.2.31+/bin/* /usr/local/bin
    
    wget https://cran.r-project.org/bin/linux/ubuntu/xenial/r-base-core_3.2.5-1xenial_amd64.deb
    apt install -y ./r-base-core_3.2.5-1xenial_amd64.deb 
    rm r-base-core_3.2.5-1xenial_amd64.deb
    R --vanilla -e 'install.packages("plyr", repo="http://mirror.ibcp.fr/pub/CRAN/")'

Collection


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Metrics

key value
id /containers/QuentinLetourneur-Let-it-bin-contigs_annotation
collection name QuentinLetourneur/Let-it-bin
branch master
tag contigs_annotation
commit 595828a19dfce3afde08afd9d4583b1e076a539f
version (container hash) e9a7187ad16aafe59fcf574b0324d167
build date 2018-09-02T22:05:36.535Z
size (MB) 1354
size (bytes) 528773151
SIF Download URL (please use pull with shub://)
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