QuentinLetourneur/Let-it-bin:concoct_cocacola
$ singularity pull shub://QuentinLetourneur/Let-it-bin:concoct_cocacola
Singularity Recipe
Bootstrap: docker
From: ubuntu:16.04
%setup
export LC_ALL=C
%files
bin/cluster_to_fasta.py
bin/fasta.py
%post
mkdir /pasteur
apt -y update
apt -y install wget zip gawk build-essential python python-pip gsl-bin libgsl0-dev libblas-dev liblapack-dev
cd /home
wget https://github.com/BinPro/CONCOCT/archive/0.4.0.tar.gz
tar -xzf 0.4.0.tar.gz
pip install bcbio-gff biopython distribute nose pandas pysam scikit-learn cvxopt
cd CONCOCT-0.4.0
make
python setup.py install
cp -r scripts/* /usr/local/bin
cd /home
wget https://www.dropbox.com/s/ciebt2y5h7pb9r2/COCACOLA-python.zip?dl=0
unzip COCACOLA-python.zip?dl=0
rm COCACOLA-python.zip?dl=0
cd COCACOLA-python
rm -r data
sed -i '1s/^/#! \/usr\/bin\/env python\n/' cocacola.py
chmod +x cocacola.py
ln -s /home/COCACOLA-python/cocacola.py /usr/local/bin/cocacola.py
Collection
- Name: QuentinLetourneur/Let-it-bin
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/QuentinLetourneur-Let-it-bin-concoct_cocacola |
collection name | QuentinLetourneur/Let-it-bin |
branch | master |
tag | concoct_cocacola |
commit | 647c7b5e55f98b734d8bcb0be2bbc1953b9bb875 |
version (container hash) | 5cb025b8ad0282ae12c0a879fb9cbcd3 |
build date | 2018-09-02T17:27:42.152Z |
size (MB) | 1092 |
size (bytes) | 418054175 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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