NagaComBio/singularity_gcnvplotting:latest

$ singularity pull shub://NagaComBio/singularity_gcnvplotting:latest

Singularity Recipe

Bootstrap: docker

From: rocker/tidyverse:3.5.1

%files
  install_script.R
  samplot_env.yml

%environment
  CONDA_INSTALL_PATH="/usr/local/miniconda3"
  CONDA_BIN_PATH="/usr/local/miniconda3/bin"
  CONDA_ENV_PATH="/usr/local/miniconda3/envs/samplot/bin"

%post
  echo "Installing R packages"
  /usr/local/bin/Rscript install_script.R

  echo "Installing miniconda"
  apt-get update && apt-get -y install wget
  wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
  chmod +x Miniconda3-latest-Linux-x86_64.sh
  CONDA_INSTALL_PATH="/usr/local/miniconda3"
  ./Miniconda3-latest-Linux-x86_64.sh -b -p $CONDA_INSTALL_PATH
  export PATH="/usr/local/miniconda3/bin:$PATH"
  conda create -n samplot -c anaconda -c bioconda -c conda-forge --file samplot_env.yml
  echo "PATH=/usr/local/miniconda3/envs/samplot/bin:$PATH" >> /usr/local/lib/R/etc/Renviron

%runscript
  source /usr/local/miniconda3/etc/profile.d/conda.sh
  conda activate samplot

%startscript
  source /usr/local/miniconda3/etc/profile.d/conda.sh
  conda acticate samplot

Collection


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Metrics

key value
id /containers/NagaComBio-singularity_gcnvplotting-latest
collection name NagaComBio/singularity_gcnvplotting
branch master
tag latest
commit 5039939ca9228de393747b040f2b21250a771b2d
version (container hash) a5c8ee183c84838bfa579f09a37796ba
build date 2021-03-20T11:50:49.025Z
size (MB) 4258.0
size (bytes) 1854439455
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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