NagaComBio/singularity_gcnvplotting:latest
$ singularity pull shub://NagaComBio/singularity_gcnvplotting:latest
Singularity Recipe
Bootstrap: docker
From: rocker/tidyverse:3.5.1
%files
install_script.R
samplot_env.yml
%environment
CONDA_INSTALL_PATH="/usr/local/miniconda3"
CONDA_BIN_PATH="/usr/local/miniconda3/bin"
CONDA_ENV_PATH="/usr/local/miniconda3/envs/samplot/bin"
%post
echo "Installing R packages"
/usr/local/bin/Rscript install_script.R
echo "Installing miniconda"
apt-get update && apt-get -y install wget
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod +x Miniconda3-latest-Linux-x86_64.sh
CONDA_INSTALL_PATH="/usr/local/miniconda3"
./Miniconda3-latest-Linux-x86_64.sh -b -p $CONDA_INSTALL_PATH
export PATH="/usr/local/miniconda3/bin:$PATH"
conda create -n samplot -c anaconda -c bioconda -c conda-forge --file samplot_env.yml
echo "PATH=/usr/local/miniconda3/envs/samplot/bin:$PATH" >> /usr/local/lib/R/etc/Renviron
%runscript
source /usr/local/miniconda3/etc/profile.d/conda.sh
conda activate samplot
%startscript
source /usr/local/miniconda3/etc/profile.d/conda.sh
conda acticate samplot
Collection
- Name: NagaComBio/singularity_gcnvplotting
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/NagaComBio-singularity_gcnvplotting-latest |
collection name | NagaComBio/singularity_gcnvplotting |
branch | master |
tag | latest |
commit | 5039939ca9228de393747b040f2b21250a771b2d |
version (container hash) | a5c8ee183c84838bfa579f09a37796ba |
build date | 2021-03-20T11:50:49.025Z |
size (MB) | 4258.0 |
size (bytes) | 1854439455 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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