NBISweden/K9-WGS-Pipeline:fastqc-0.11.5

$ singularity pull shub://NBISweden/K9-WGS-Pipeline:fastqc-0.11.5

Singularity Recipe

bootstrap: docker
from: openjdk:8

# This is copied from https://github.com/SciLifeLab/CAW
%labels
AUTHOR Johan Viklund
MAINTAINER johan.viklund@gmail.com

%environment
FASTQC_VERSION=0.11.5

# Install libraries
%post
apt-get update
apt-get install -y --no-install-recommends wget
rm -rf /var/lib/apt/lists/*

# Install FastQC
export FASTQC_VERSION=0.11.5
wget --quiet -O fastqc_v${FASTQC_VERSION}.zip http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v${FASTQC_VERSION}.zip
unzip fastqc_v${FASTQC_VERSION}.zip -d /opt/
chmod 755 /opt/FastQC/fastqc
ln -s /opt/FastQC/fastqc /usr/local/bin/fastqc
rm fastqc_v${FASTQC_VERSION}.zip

Collection


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Metrics

key value
id /containers/NBISweden-K9-WGS-Pipeline-fastqc-0.11.5
collection name NBISweden/K9-WGS-Pipeline
branch master
tag fastqc-0.11.5
commit 3bc6c48dd5b953c4579a1d967540f950d78015e8
version (container hash) 8bad0da004b27b8dc0e18ef663da17a6
build date 2020-11-19T06:02:17.109Z
size (MB) 760
size (bytes) 274526239
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
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