MarissaLL/singularity-containers:r_3.5.0

$ singularity pull shub://MarissaLL/singularity-containers:r_3.5.0

Singularity Recipe

Bootstrap: docker
From: bioconductor/release_core2:R3.5.0_Bioc3.7

%help

    R 3.5.0 with Bioconductor 3.7
    
%labels

    MAINTAINER "Marissa Le Lec"
    VERSION "Bioconductor 3.7"

%post
    # install packages from bioconductor
    Rscript -e "options(Ncpus=8); \
        BiocInstaller::biocLite(c( \
            'adegenet', \
            'boa', \
            'coda', \
            'data.table', \
            'ggmap', \
            'ggridges', \
            'grid', \
            'gtable', \
            'maps', \
            'reshape2', \
            'scales', \
            'SNPRelate', \
            'tidyverse' \
            ), \
        type='source', ask=FALSE)"

%runscript

    exec /usr/local/bin/R "$@"

Collection


View on Datalad

Metrics

key value
id /containers/MarissaLL-singularity-containers-r_3.5.0
collection name MarissaLL/singularity-containers
branch master
tag r_3.5.0
commit 5b5a2e264c6b4cc2aded70eff4edaa661c63c21d
version (container hash) f713cf93d67765d2d37eb87339495de5
build date 2019-10-07T00:05:40.847Z
size (MB) 2021
size (bytes) 730239007
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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