MPIB/singularity-mrtrix3:3.0_rc2

$ singularity pull shub://MPIB/singularity-mrtrix3:3.0_rc2

Singularity Recipe

Bootstrap: docker
FROM: debian:9.3-slim
# Debian Stretch without manpages and other files
# usually not needed in containers

%help
This image contains mrtrix3 version 3.0_RC2.
The mrtrix3 binaries are at /opt/mrtrix3/bin/

%post
export BUILD_SOFTWARE="git"
export CONTAINER_SOFTWARE="g++ python python-numpy libeigen3-dev zlib1g-dev libqt4-opengl-dev libgl1-mesa-dev libfftw3-dev libtiff5-dev qt4-default"
export CLONE_DIR=/opt
export MRTRIX_BUILD_DIR=${CLONE_DIR}/mrtrix3
export GITHUB_REPO="https://github.com/MRtrix3/mrtrix3.git"
export MRTRIX_VERSION="3.0_RC2"

apt-get update
apt-get install $BUILD_SOFTWARE $CONTAINER_SOFTWARE -y
cd $CLONE_DIR

git clone $GITHUB_REPO
cd $MRTRIX_BUILD_DIR
git checkout $MRTRIX_VERSION
python configure
python build

echo "export PATH=${MRTRIX_BUILD_DIR}/bin:$PATH" >> $SINGULARITY_ENVIRONMENT

# Cleanup
apt-get purge $BUILD_SOFTWARE -y
apt-get autoclean -y
apt-get autoremove -y
rm -rf /var/lib/apt/lists/*

Collection

• Name: MPIB/singularity-mrtrix3
• License: None

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