MPIB/singularity-jags:latest
$ singularity pull shub://MPIB/singularity-jags:latest
Singularity Recipe
Bootstrap: docker
FROM: debian:stable-slim
%help
Contains JAGS version 4.3.0
%post
apt-get update
# Packages needed inside the container.
export CONTAINER_SOFTWARE="gcc g++ gfortran make libcurl3-gnutls libopenblas-base"
## Set build variables.
# Packages needed only for the build process.
export BUILD_SOFTWARE="curl libblas-dev liblapack-dev"
# Needed for downloading source.
export JAGS_VERSION=4.3.0
export JAGS_BASE_URI="https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/"
export JAGS_FOLDER_NAME="JAGS-$JAGS_VERSION"
export JAGS_PACKAGE_NAME="${JAGS_FOLDER_NAME}.tar.gz"
# Set paths to facilitate the build process.
export BUILDHOME="/tmp"
# Install build and run requirements.
apt-get update
apt-get install $BUILD_SOFTWARE $CONTAINER_SOFTWARE -y
# Get JAGS source package
curl -L -o "$JAGS_PACKAGE_NAME" ${JAGS_BASE_URI}${JAGS_PACKAGE_NAME}"/download#"
tar -xf "$JAGS_PACKAGE_NAME"
# Build JAGS
cd "$JAGS_FOLDER_NAME"
./configure
make
make install
# Removing installation overhead.
cd
rm -rf /tmp/*
apt-get purge $BUILD_SOFTWARE -y
apt-get autoclean -y
apt-get autoremove -y
rm -rf /var/lib/apt/lists/*
%test
# Can we call JAGS?
echo exit | jags
Collection
- Name: MPIB/singularity-jags
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/MPIB-singularity-jags-latest |
collection name | MPIB/singularity-jags |
branch | master |
tag | latest |
commit | 028b096dff29865e50c0f495e13633922622ce61 |
version (container hash) | 2e9d717db32786c7ead150259291bc41 |
build date | 2020-01-27T10:41:27.737Z |
size (MB) | 569 |
size (bytes) | 161103903 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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