MPIB/singularity-fsl:6.0.4-cuda8
$ singularity pull shub://MPIB/singularity-fsl:6.0.4-cuda8
Singularity Recipe
Bootstrap: docker
From: debian:9-slim
%labels
AUTHOR krause@mpib-berlin.mpg.de
%post
mkdir -p /usr/share/man/man1 # https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=863199
echo 'deb http://deb.debian.org/debian stretch main contrib non-free' > /etc/apt/sources.list
echo 'deb http://deb.debian.org/debian stretch-updates main contrib non-free' >> /etc/apt/sources.list
echo 'deb http://security.debian.org stretch/updates main contrib non-free' >> /etc/apt/sources.list
apt-get update -y
DEBIAN_FRONTEND=noninteractive apt-get -y -o Dpkg::Options::="--force-confdef" -o Dpkg::Options::="--force-confold" install \
wget python-minimal libgomp1 ca-certificates \
libglu1-mesa libgl1-mesa-glx libsm6 libice6 libxt6 \
libjpeg62-turbo libpng16-16 libxrender1 libxcursor1 \
libxinerama1 libfreetype6 libxft2 libxrandr2 libmng1 \
libgtk2.0-0 libpulse0 libasound2 libcaca0 libopenblas-base \
unzip bzip2 dc bc
DEBIAN_FRONTEND=noninteractive apt-get -y -o Dpkg::Options::="--force-confdef" -o Dpkg::Options::="--force-confold" install \
nvidia-cuda-toolkit libcupti-dev nvidia-driver nvidia-smi
wget https://fsl.fmrib.ox.ac.uk/fsldownloads/fslinstaller.py
python2 fslinstaller.py -d /usr/local/fsl -V 6.0.4
echo '/usr/local/fsl/lib' > /etc/ld.so.conf.d/fsl.conf
ldconfig
wget http://users.fmrib.ox.ac.uk/~moisesf/Probtrackx_GPU/FSL_6/CUDA_8.0/probtrackx2_gpu.zip
unzip -o probtrackx2_gpu.zip -d /usr/local/fsl/bin/
wget http://users.fmrib.ox.ac.uk/~moisesf/Bedpostx_GPU/FSL_6/CUDA_8.0/bedpostx_gpu.zip
unzip -o bedpostx_gpu.zip -d /usr/local/fsl/bin/
apt-get clean && apt-get autoremove -y
rm -f fslinstaller.py bedpostx_gpu.zip probtrackx_gpu.zip
ln -sf /usr/local/fsl/bin/eddy_cuda8.0 /usr/local/fsl/bin/eddy_cuda
%environment
FSLDIR=/usr/local/fsl
. ${FSLDIR}/etc/fslconf/fsl.sh
PATH=${FSLDIR}/bin:${PATH}
export FSLDIR PATH
Collection
- Name: MPIB/singularity-fsl
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/MPIB-singularity-fsl-6.0.4-cuda8 |
collection name | MPIB/singularity-fsl |
branch | master |
tag | 6.0.4-cuda8 |
commit | ccb7cd8f3dbbea1edbcfb55934fca752585f8856 |
version (container hash) | 49e7a01f1a7d7366d85e545dbf8be07697138688dab7a9381d035fd7c29cdd55 |
build date | 2021-03-18T14:02:37.518Z |
size (MB) | 7843.390625 |
size (bytes) | 8224391168 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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