MPIB/singularity-ashs:fastashs.v1.0.0

$ singularity pull shub://MPIB/singularity-ashs:fastashs.v1.0.0

Singularity Recipe

Bootstrap: docker
FROM: debian:9.3-slim
# Debian Stretch without manpages and other files
# usually not needed in containers.

%help

Contains fastashes version v1.0.0

%post

# Set build specific variables
export BUILD_SOFTWARE="git"
export CONTAINER_SOFTWARE="parallel libxt6 libxext-dev libgl-gst"
export ASHS_VERSION="v1.0.0"
# Set paths to facilitate the build process.
export BUILDHOME="/opt"
export ASHS_HOME=${BUILDHOME}/ashs

# Install build requirements.
apt-get update
apt-get install $BUILD_SOFTWARE $CONTAINER_SOFTWARE -y

# Get ASHS from GitHub.
cd $BUILDHOME
git clone https://github.com/pyushkevich/ashs.git

# Select desired version.
cd $ASHS_HOME
git checkout $ASHS_VERSION

# Set the path environment variables for ASHS.

echo "export ASHS_ROOT=${ASHS_HOME}" >> $SINGULARITY_ENVIRONMENT
echo "export PATH=${ASHS_HOME}/bin:$PATH" >> $SINGULARITY_ENVIRONMENT


#cleanup
rm -rf $ASHS_HOME/.git*
apt-get purge $BUILD_SOFTWARE -y
apt-get autoclean -y
apt-get autoremove -y
rm -rf /var/lib/apt/lists/*

Collection

• Name: MPIB/singularity-ashs
• License: None

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