LooseNucleus/bsmap-singularity:latest

$ singularity pull shub://LooseNucleus/bsmap-singularity:latest

Singularity Recipe

BootStrap: debootstrap
OSVersion: xenial
MirrorURL: http://us.archive.ubuntu.com/ubuntu/

%post
 
    echo "deb http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-backports main restricted universe multiverse" | tee -a /etc/apt/sources.list
    echo "deb http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial main restricted" | tee -a /etc/apt/sources.list
    echo "deb http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial multiverse" | tee -a /etc/apt/sources.list
    echo "deb http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial universe" | tee -a /etc/apt/sources.list
    echo "deb http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-updates main restricted" | tee -a /etc/apt/sources.list
    echo "deb http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-updates multiverse" | tee -a /etc/apt/sources.list
    echo "deb http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-updates universe" | tee -a /etc/apt/sources.list
    echo "deb http://security.ubuntu.com/ubuntu xenial-security main restricted" | tee -a /etc/apt/sources.list
    echo "deb http://security.ubuntu.com/ubuntu xenial-security multiverse" | tee -a /etc/apt/sources.list
    echo "deb http://security.ubuntu.com/ubuntu xenial-security universe" | tee -a /etc/apt/sources.list
    echo "deb-src http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-backports main restricted universe multiverse" | tee -a /etc/apt/sources.list
    echo "deb-src http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial main restricted" | tee -a /etc/apt/sources.list
    echo "deb-src http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial multiverse" | tee -a /etc/apt/sources.list
    echo "deb-src http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial universe" | tee -a /etc/apt/sources.list
    echo "deb-src http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-updates main restricted" | tee -a /etc/apt/sources.list
    echo "deb-src http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-updates multiverse" | tee -a /etc/apt/sources.list
    echo "deb-src http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-updates universe" | tee -a /etc/apt/sources.list
    echo "deb-src http://security.ubuntu.com/ubuntu xenial-security main restricted" | tee -a /etc/apt/sources.list
    echo "deb-src http://security.ubuntu.com/ubuntu xenial-security multiverse" | tee -a /etc/apt/sources.list
    echo "deb-src http://security.ubuntu.com/ubuntu xenial-security universe" | tee -a /etc/apt/sources.list
 
    apt-get -y update
    apt-get install -y curl wget tar gzip gcc build-essential zlib1g-dev python-minimal
    wget -O bsmap-2.90.tgz http://lilab.research.bcm.edu/dldcc-web/lilab/yxi/bsmap/bsmap-2.90.tgz
    mkdir software
    tar -xvzf bsmap-2.90.tgz
    cp -R bsmap-2.90/ software/bsmap-2.90
    cd software/bsmap-2.90
    make
    make install
     
% environment 
  export PATH=/software/bsmap-2.90:$PATH

Collection


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Metrics

key value
id /containers/LooseNucleus-bsmap-singularity-latest
collection name LooseNucleus/bsmap-singularity
branch master
tag latest
commit 19bfe44a305f533fe994af60b0137b7b867defc2
version (container hash) db55b5c21f128d8900f367a885fc8f72
build date 2019-01-03T04:17:35.561Z
size (MB) 668
size (bytes) 279797791
SIF Download URL (please use pull with shub://)
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Singularity Recipe Singularity Recipe on Datalad
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