LooseNucleus/bsmap-singularity:latest
$ singularity pull shub://LooseNucleus/bsmap-singularity:latest
Singularity Recipe
BootStrap: debootstrap
OSVersion: xenial
MirrorURL: http://us.archive.ubuntu.com/ubuntu/
%post
echo "deb http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-backports main restricted universe multiverse" | tee -a /etc/apt/sources.list
echo "deb http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial main restricted" | tee -a /etc/apt/sources.list
echo "deb http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial multiverse" | tee -a /etc/apt/sources.list
echo "deb http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial universe" | tee -a /etc/apt/sources.list
echo "deb http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-updates main restricted" | tee -a /etc/apt/sources.list
echo "deb http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-updates multiverse" | tee -a /etc/apt/sources.list
echo "deb http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-updates universe" | tee -a /etc/apt/sources.list
echo "deb http://security.ubuntu.com/ubuntu xenial-security main restricted" | tee -a /etc/apt/sources.list
echo "deb http://security.ubuntu.com/ubuntu xenial-security multiverse" | tee -a /etc/apt/sources.list
echo "deb http://security.ubuntu.com/ubuntu xenial-security universe" | tee -a /etc/apt/sources.list
echo "deb-src http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-backports main restricted universe multiverse" | tee -a /etc/apt/sources.list
echo "deb-src http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial main restricted" | tee -a /etc/apt/sources.list
echo "deb-src http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial multiverse" | tee -a /etc/apt/sources.list
echo "deb-src http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial universe" | tee -a /etc/apt/sources.list
echo "deb-src http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-updates main restricted" | tee -a /etc/apt/sources.list
echo "deb-src http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-updates multiverse" | tee -a /etc/apt/sources.list
echo "deb-src http://nova.clouds.archive.ubuntu.com/ubuntu/ xenial-updates universe" | tee -a /etc/apt/sources.list
echo "deb-src http://security.ubuntu.com/ubuntu xenial-security main restricted" | tee -a /etc/apt/sources.list
echo "deb-src http://security.ubuntu.com/ubuntu xenial-security multiverse" | tee -a /etc/apt/sources.list
echo "deb-src http://security.ubuntu.com/ubuntu xenial-security universe" | tee -a /etc/apt/sources.list
apt-get -y update
apt-get install -y curl wget tar gzip gcc build-essential zlib1g-dev python-minimal
wget -O bsmap-2.90.tgz http://lilab.research.bcm.edu/dldcc-web/lilab/yxi/bsmap/bsmap-2.90.tgz
mkdir software
tar -xvzf bsmap-2.90.tgz
cp -R bsmap-2.90/ software/bsmap-2.90
cd software/bsmap-2.90
make
make install
% environment
export PATH=/software/bsmap-2.90:$PATH
Collection
- Name: LooseNucleus/bsmap-singularity
- License: GNU General Public License v3.0
View on Datalad
Metrics
key | value |
---|---|
id | /containers/LooseNucleus-bsmap-singularity-latest |
collection name | LooseNucleus/bsmap-singularity |
branch | master |
tag | latest |
commit | 19bfe44a305f533fe994af60b0137b7b867defc2 |
version (container hash) | db55b5c21f128d8900f367a885fc8f72 |
build date | 2019-01-03T04:17:35.561Z |
size (MB) | 668 |
size (bytes) | 279797791 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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