LokiLuciferase/buchstabensuppe:latest

$ singularity pull shub://LokiLuciferase/buchstabensuppe:latest

Singularity Recipe

Bootstrap: docker
From: centos:latest

%help
    This container encapsulates the annotation,
    text mining, model creation and prediction tools
    of the Buchstabensuppe pipeline.
    Please run this container with the external Buchstabensuppe data folder attached via the Bind (-B) command:

    singularity run -B <path to data folder>:/data <container name> <arguments>

    For a list of all available subcommands,
    please issue:

        singularity run -B <path to data folder>:/data <container name> --help

%files
    . /app

%post
    bash /app/container_install.sh

%environment
    PATH=/opt/conda/bin:$PATH
    PYTHONPATH=/app
    QT_QPA_PLATFORM=offscreen

    export PATH
    export PYTHONPATH
    export QT_QPA_PLATFORM

%runscript
    exec bs "$@"

Collection


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Metrics

key value
id /containers/LokiLuciferase-buchstabensuppe-latest
collection name LokiLuciferase/buchstabensuppe
branch master
tag latest
commit 21e86401d7ecca1f054c86cb5561891e907793a4
version (container hash) 8172bc65e6fcda9813e6e0cf6b3ec833
build date 2019-07-16T20:46:14.889Z
size (MB) 2391
size (bytes) 755355679
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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