LokiLuciferase/buchstabensuppe:latest
$ singularity pull shub://LokiLuciferase/buchstabensuppe:latest
Singularity Recipe
Bootstrap: docker
From: centos:latest
%help
This container encapsulates the annotation,
text mining, model creation and prediction tools
of the Buchstabensuppe pipeline.
Please run this container with the external Buchstabensuppe data folder attached via the Bind (-B) command:
singularity run -B <path to data folder>:/data <container name> <arguments>
For a list of all available subcommands,
please issue:
singularity run -B <path to data folder>:/data <container name> --help
%files
. /app
%post
bash /app/container_install.sh
%environment
PATH=/opt/conda/bin:$PATH
PYTHONPATH=/app
QT_QPA_PLATFORM=offscreen
export PATH
export PYTHONPATH
export QT_QPA_PLATFORM
%runscript
exec bs "$@"
Collection
- Name: LokiLuciferase/buchstabensuppe
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/LokiLuciferase-buchstabensuppe-latest |
collection name | LokiLuciferase/buchstabensuppe |
branch | master |
tag | latest |
commit | 21e86401d7ecca1f054c86cb5561891e907793a4 |
version (container hash) | 8172bc65e6fcda9813e6e0cf6b3ec833 |
build date | 2019-07-16T20:46:14.889Z |
size (MB) | 2391 |
size (bytes) | 755355679 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.