KatOfCats/vcftools:latest

$ singularity pull shub://KatOfCats/vcftools:latest

Singularity Recipe

Bootstrap: docker
From: gcc:5.5.0
IncludeCmd: yes

%setup
# Copy any necessary files

%environment
 # Use bash as default shell
    SHELL=/bin/bash

    # Add paths
    PATH="/usr/local/vcftools/bin:$PATH"

    # Export paths
    export PATH


%post
    # Make gpfs folder to hold mount
    mkdir /gpfs
    mkdir /shared
    mkdir /local
    mkdir /scratch
    # Create and move to build directory
    mkdir /root/build && cd /root/build

# run OS updates
apt-get update -y  && apt-get upgrade -y

# Install vcftools
git clone https://github.com/vcftools/vcftools.git
cd vcftools
./autogen.sh
./configure
make
make install

%labels
 edited from HPC UEA Team  hpc.admin@uea.ac.uk

Collection

• Name: KatOfCats/vcftools
• License: GNU Lesser General Public License v3.0

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