ISU-HPC/plasflow:latest
$ singularity pull shub://ISU-HPC/plasflow:latest
Singularity Recipe
bootstrap: docker
FROM: bioconductor/release_core2
%labels
AUTHOR Yasasvy Nanyam ynanyam@iastate.edu
%post
apt install -y python3-pip libreadline-dev libpcre3 libpcre3-dev lzma lzma-dev liblzma-dev bzip2 libbz2-dev
pip3 install --no-cache-dir https://storage.googleapis.com/tensorflow/linux/cpu/tensorflow-0.10.0rc0-cp35-cp35m-linux_x86_64.whl
pip3 install --no-cache-dir plasFlow
pip3 install --no-cache-dir biopython
# Setting required library paths
echo 'export LD_LIBRARY_PATH=/usr/local/lib/R/lib' >>$SINGULARITY_ENVIRONMENT
echo 'export TMPDIR=/local/scratch' >>$SINGULARITY_ENVIRONMENT
Collection
- Name: ISU-HPC/plasflow
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/ISU-HPC-plasflow-latest |
collection name | ISU-HPC/plasflow |
branch | master |
tag | latest |
commit | bcf9b8991b3098a410937531b7c7f1fd232b135d |
version (container hash) | 95c620ceae632ce2094deff5f3d74ec0 |
build date | 2018-05-10T14:15:21.691Z |
size (MB) | 2409 |
size (bytes) | 802148383 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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