ISU-HPC/plasflow:latest

$ singularity pull shub://ISU-HPC/plasflow:latest

Singularity Recipe

bootstrap: docker
FROM: bioconductor/release_core2

%labels
AUTHOR Yasasvy Nanyam ynanyam@iastate.edu

%post
apt install -y python3-pip libreadline-dev libpcre3 libpcre3-dev lzma lzma-dev liblzma-dev bzip2 libbz2-dev
pip3 install --no-cache-dir https://storage.googleapis.com/tensorflow/linux/cpu/tensorflow-0.10.0rc0-cp35-cp35m-linux_x86_64.whl
pip3 install --no-cache-dir plasFlow
pip3 install --no-cache-dir biopython
# Setting required library paths
echo 'export LD_LIBRARY_PATH=/usr/local/lib/R/lib' >>$SINGULARITY_ENVIRONMENT
echo 'export TMPDIR=/local/scratch' >>$SINGULARITY_ENVIRONMENT

Collection


View on Datalad

Metrics

key value
id /containers/ISU-HPC-plasflow-latest
collection name ISU-HPC/plasflow
branch master
tag latest
commit bcf9b8991b3098a410937531b7c7f1fd232b135d
version (container hash) 95c620ceae632ce2094deff5f3d74ec0
build date 2018-05-10T14:15:21.691Z
size (MB) 2409
size (bytes) 802148383
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.