ISU-HPC/SALSA:latest

$ singularity pull shub://ISU-HPC/SALSA:latest

Singularity Recipe

bootstrap: shub
FROM: ISU-HPC/centos7-base

%labels
AUTHOR Yasasvy Nanyam ynanyam@iastate.edu

%post
yum install -y epel-release
yum install -y python2-devel boost boost-devel
yum install -y python-pip
yum install -y git
yum clean all
rm -rf /var/yum/cache

# Install pip package Networkx v 1.1 and numpy
pip2 --no-cache-dir install numpy networkx==1.1

# SALSA
cd /
git clone https://github.com/machinegun/SALSA.git
cd SALSA
for FILE_NAME in `ls -1 /SALSA/*.py`; do
echo '#!/usr/bin/env python' | cat - $FILE_NAME > temp && mv temp $FILE_NAME
done
echo 'export PATH=/SALSA:$PATH' >>$SINGULARITY_ENVIRONMENT
chmod a+x *.py

Collection

• Name: ISU-HPC/SALSA
• License: None

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