IARCbioinfo/polysolver-singularity:v4
$ singularity pull shub://IARCbioinfo/polysolver-singularity:v4
Singularity Recipe
Bootstrap: docker
From: sachet/polysolver:v4
%post
mkdir /data
sed -i 's.#!/bin/sh.#!/bin/bash.g' /home/polysolver/scripts/shell_call_hla_type
sed -i 's.TMP_DIR=\$outDir.TMP_DIR=/tmp.g' /home/polysolver/scripts/shell_call_hla_type
sed -i 's.TMP_DIR=/home/polysolver.TMP_DIR=/tmp.g' /home/polysolver/scripts/shell_call_hla_type
sed -i 's.\$SAMTOOLS_DIR./home/polysolver/binaries.g' /home/polysolver/scripts/shell_call_hla_type
sed -i 's.6:29941260-29945884.chr6:29941260-29945884.g' /home/polysolver/scripts/shell_call_hla_type
sed -i 's.6:31353872-31357187.chr6:31353872-31357187.g' /home/polysolver/scripts/shell_call_hla_type
sed -i 's.6:31268749-31272105.chr6:31268749-31272105.g' /home/polysolver/scripts/shell_call_hla_type
Collection
View on Datalad
Metrics
key | value |
---|---|
id | /containers/IARCbioinfo-polysolver-singularity-v4 |
collection name | IARCbioinfo/polysolver-singularity |
branch | master |
tag | v4 |
commit | 6526dbf308a47cf99d5a266403668c03b176847c |
version (container hash) | 8c7ef4db6c2011a18f27a558d81d5d59 |
build date | 2021-04-14T22:24:06.577Z |
size (MB) | 1929 |
size (bytes) | 542879775 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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