IARCbioinfo/polysolver-singularity:v4

$ singularity pull shub://IARCbioinfo/polysolver-singularity:v4

Singularity Recipe

Bootstrap: docker
From: sachet/polysolver:v4
%post
    mkdir /data
    sed -i 's.#!/bin/sh.#!/bin/bash.g' /home/polysolver/scripts/shell_call_hla_type
    sed -i 's.TMP_DIR=\$outDir.TMP_DIR=/tmp.g' /home/polysolver/scripts/shell_call_hla_type
    sed -i 's.TMP_DIR=/home/polysolver.TMP_DIR=/tmp.g' /home/polysolver/scripts/shell_call_hla_type
    sed -i 's.\$SAMTOOLS_DIR./home/polysolver/binaries.g' /home/polysolver/scripts/shell_call_hla_type
    sed -i 's.6:29941260-29945884.chr6:29941260-29945884.g' /home/polysolver/scripts/shell_call_hla_type
    sed -i 's.6:31353872-31357187.chr6:31353872-31357187.g' /home/polysolver/scripts/shell_call_hla_type
    sed -i 's.6:31268749-31272105.chr6:31268749-31272105.g' /home/polysolver/scripts/shell_call_hla_type

Collection


View on Datalad

Metrics

key value
id /containers/IARCbioinfo-polysolver-singularity-v4
collection name IARCbioinfo/polysolver-singularity
branch master
tag v4
commit 6526dbf308a47cf99d5a266403668c03b176847c
version (container hash) 8c7ef4db6c2011a18f27a558d81d5d59
build date 2021-04-14T22:24:06.577Z
size (MB) 1929
size (bytes) 542879775
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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