HugoMananet/VarScan:varscan.2.4.2

$ singularity pull shub://HugoMananet/VarScan:varscan.2.4.2

Singularity Recipe

#!/bin/bash


Bootstrap: docker
From: phusion/baseimage:0.10.2

%label

	MAINTAINER Hugo Mananet
	VERSION 2.4.2

%post

	mkdir /soft
	mkdir /work
	mkdir /user1
	mkdir /user2
	mkdir /tmp3

	apt-get -y update
	apt-get -y install build-essential \
	wget \
	openjdk-8-jre 

	mkdir -p /opt/varscan_2.4.2/
	wget https://github.com/dkoboldt/varscan/releases/download/2.4.2/VarScan.v2.4.2.jar && mv VarScan.v2.4.2.jar /opt/varscan_2.4.2/varscan.jar

%runscript

	java -jar /opt/varscan_2.4.2/varscan.jar "$@"

Collection


View on Datalad

Metrics

key value
id /containers/HugoMananet-VarScan-varscan.2.4.2
collection name HugoMananet/VarScan
branch master
tag varscan.2.4.2
commit 808506bce5fddfd6ea579de05d60b0fab3d22f9b
version (container hash) ea43683d17db00bf4f87952c79985321
build date 2018-12-03T17:26:31.297Z
size (MB) 705
size (bytes) 274321439
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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