GuillaumeStuder/essai_hackathon_container:latest
$ singularity pull shub://GuillaumeStuder/essai_hackathon_container:latest
Singularity Recipe
BootStrap: docker
From: r-base:4.0.2
%labels
Maintainer Guillaume Studer
base.image="r-base:4.0.2"
version="1"
software="EnhencedVolcano+DESeq2+FactoMineR+factoextra"
%help
Please faites que ca fonctionne
%post
apt-get update
apt-get install -y procps libssl-dev libcurl4-gnutls-dev curl git libopenmpi-dev openmpi-bin openmpi-doc libxml2-dev
R --slave -e 'install.packages("ggplot2")'
R --slave -e 'install.packages("ggrepel")'
R --slave -e 'install.packages("FactoMineR")'
R --slave -e 'install.packages("factoextra")'
R --slave -e 'install.packages("matrixStats")'
R --slave -e 'install.packages("ggalt")'
R --slave -e 'install.packages("ggrastr")'
R --slave -e 'install.packages("knitr")'
R --slave -e 'install.packages("gridExtra")'
R --slave -e 'install.packages("RUnit")'
R --slave -e 'install.packages("BiocManager")'
R --slave -e 'BiocManager::install("airway")'
R --slave -e 'BiocManager::install("org.Hs.eg.db")'
R --slave -e 'BiocManager::install("pasilla")'
R --slave -e 'BiocManager::install("magrittr")'
R --slave -e 'BiocManager::install("BiocGenerics")'
R --slave -e 'BiocManager::install("GenomeInfoDb")'
R --slave -e 'BiocManager::install("MatrixGenerics")'
R --slave -e 'BiocManager::install("Biobase")'
R --slave -e 'BiocManager::install("IRanges")'
R --slave -e 'BiocManager::install("S4Vectors")'
R --slave -e 'BiocManager::install("GenomicRanges")'
R --slave -e 'BiocManager::install("SummarizedExperiment")'
R --slave -e 'BiocManager::install("DESeq2")'
R --slave -e 'BiocManager::install("EnhancedVolcano")'
Collection
- Name: GuillaumeStuder/essai_hackathon_container
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/GuillaumeStuder-essai_hackathon_container-latest |
collection name | GuillaumeStuder/essai_hackathon_container |
branch | main |
tag | latest |
commit | b42a20a898bb66e879d2692ab708c5555d815fbd |
version (container hash) | 85e11aec142eaa1d968c0580deaf8e20 |
build date | 2020-11-27T00:39:55.757Z |
size (MB) | 1860.0 |
size (bytes) | 693100575 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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