GreenwoodLab/pcev_pipelineCBRAIN:pcev_v1.0

$ singularity pull shub://GreenwoodLab/pcev_pipelineCBRAIN:pcev_v1.0

Singularity Recipe

Bootstrap: docker
From: centos:6.9

%labels
  Maintainer Natacha Beck && Marie Forest

%files
  . pcev_CBRAIN

%post
  yum update -y
  yum install -y unzip \
                 wget  \
                 epel-release \
                 java-1.8.0-openjdk-headless

  yum install -y  R 
  
  echo 'install.packages(c("pcev"), repos= "http://cran.us.r-project.org")' > /tmp/packages.R
  Rscript /tmp/packages.R 

  chmod 755 pcev_CBRAIN/run_pcevCBRAIN.sh \
                   && cp pcev_CBRAIN/run_pcevCBRAIN.sh /bin/

  chmod 755 pcev_CBRAIN/reportRedaction.sh \
                   && cp pcev_CBRAIN/reportRedaction.sh /bin/

  chmod 755 pcev_CBRAIN/pcev_for_cbrain.R \
                   && cp pcev_CBRAIN/pcev_for_cbrain.R /bin/

Collection


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Metrics

key value
id /containers/GreenwoodLab-pcev_pipelineCBRAIN-pcev_v1.0
collection name GreenwoodLab/pcev_pipelineCBRAIN
branch master
tag pcev_v1.0
commit df740bbe6a102e1bf83f5c45658367a4751f2a52
version (container hash) f541c966553b13a5ce4d95cc096422ba
build date 2021-03-12T01:20:39.715Z
size (MB) 1278
size (bytes) 456691743
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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