FelixKrueger/SlamDunk_Shub:latest
$ singularity pull shub://FelixKrueger/SlamDunk_Shub:latest
Singularity Recipe
Bootstrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/
Include: yum
%help
This is a test message.
%setup
%labels
DESCRIPTION Singularity image containing all requirements for a SlamDunk installation
VERSION 1.0
%environment
PATH=/opt/miniconda/bin:$PATH
export PATH
%post
yum -y install wget
yum -y install epel-release
yum -y update
yum -y install bzip2
yum -y install python-pip
yum -y install tar
yum -y install which
echo "Installing Development Tools YUM group"
yum -y groupinstall "Development tools"
wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh -O $HOME/miniconda.sh
bash $HOME/miniconda.sh -b -p $SINGULARITY_ROOT/opt/miniconda
export PATH="$SINGULARITY_ROOT/opt/miniconda/bin:$PATH"
# Bioconda (http://ddocent.com//bioconda/)
conda config --add channels r
conda config --add channels defaults
conda config --add channels conda-forge
conda config --add channels bioconda
conda create -y --name SlamDunk -c bioconda slamdunk
# Installing Java
yum -y install java-1.8.0-openjdk
%runscript
Collection
- Name: FelixKrueger/SlamDunk_Shub
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/FelixKrueger-SlamDunk_Shub-latest |
collection name | FelixKrueger/SlamDunk_Shub |
branch | master |
tag | latest |
commit | bcd48f4462b4a8d6a0b9ea8742aa931dc5766362 |
version (container hash) | c83fd4f42e3af9c6f6faf854d21917fa |
build date | 2019-10-05T01:19:52.145Z |
size (MB) | 5060 |
size (bytes) | 2175971359 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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