FelixKrueger/SlamDunk_Shub:latest

$ singularity pull shub://FelixKrueger/SlamDunk_Shub:latest

Singularity Recipe

Bootstrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/
Include: yum

%help
  This is a test message.

%setup

%labels
    DESCRIPTION Singularity image containing all requirements for a SlamDunk installation
    VERSION 1.0

%environment
    PATH=/opt/miniconda/bin:$PATH
    export PATH
    
%post
  yum -y install wget
  yum -y install epel-release
  yum -y update
  yum -y install bzip2
  yum -y install python-pip
  yum -y install tar
  yum -y install which
  
  echo "Installing Development Tools YUM group"
  yum -y groupinstall "Development tools"
  
  wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh -O $HOME/miniconda.sh
  bash $HOME/miniconda.sh -b -p $SINGULARITY_ROOT/opt/miniconda
  export PATH="$SINGULARITY_ROOT/opt/miniconda/bin:$PATH"
 
  # Bioconda (http://ddocent.com//bioconda/)
  conda config --add channels r
  conda config --add channels defaults
  conda config --add channels conda-forge
  conda config --add channels bioconda
  conda create -y --name SlamDunk -c bioconda slamdunk
  
  # Installing Java
  yum -y install java-1.8.0-openjdk
  
%runscript

Collection


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Metrics

key value
id /containers/FelixKrueger-SlamDunk_Shub-latest
collection name FelixKrueger/SlamDunk_Shub
branch master
tag latest
commit bcd48f4462b4a8d6a0b9ea8742aa931dc5766362
version (container hash) c83fd4f42e3af9c6f6faf854d21917fa
build date 2019-10-05T01:19:52.145Z
size (MB) 5060
size (bytes) 2175971359
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
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