FelixKrueger/Singularity_Test2:latest
$ singularity pull shub://FelixKrueger/Singularity_Test2:latest
Singularity Recipe
Bootstrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/
Include: yum
%help
This is a test message.
%setup
%labels
DESCRIPTION Singularity image containing all requirements for a SlamDunk installation
VERSION 1.0
%post
yum -y install wget
yum -y install epel-release
yum -y update
yum -y install bzip2
yum -y install python-pip
yum -y install tar
yum -y install which
echo "Installing Development Tools YUM group"
yum -y groupinstall "Development tools"
wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh -O $HOME/miniconda.sh
bash $HOME/miniconda.sh -b -p $SINGULARITY_ROOT/opt/miniconda
export PATH="$SINGULARITY_ROOT/opt/miniconda/bin:$PATH"
# Bioconda (http://ddocent.com//bioconda/)
conda config --add channels r
conda config --add channels defaults
conda config --add channels conda-forge
conda config --add channels bioconda
conda create -y --name SlamDunk -c bioconda slamdunk
# Installing Bowtie2
conda install bowtie2=2.3.0
%environment
#Set your toolname here and the appropriate version to have this in the metadata of your container
#BOWTIE2=v2.3.0
%runscript
Collection
- Name: FelixKrueger/Singularity_Test2
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/FelixKrueger-Singularity_Test2-latest |
collection name | FelixKrueger/Singularity_Test2 |
branch | master |
tag | latest |
commit | c847f32cc0207358dad6f1c5f45ff2822233e09c |
version (container hash) | e357bad109a7687f8d37661c6dfa53c5 |
build date | 2018-09-24T17:40:58.491Z |
size (MB) | 5143 |
size (bytes) | 2211987487 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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