Dill-PICL/GOMAP-singularity:v1.1

$ singularity pull shub://Dill-PICL/GOMAP-singularity:v1.1

Singularity Recipe

Bootstrap: shub
From: Dill-PICL/GOMAP-base:bionic

%labels
MAINTAINER Kokulapalan Wimalanathan
Version 1.1
HPC non-mpich

%files
    my.cnf 

%environment
    export LC_ALL=C
    export DEBIAN_FRONTEND=noninteractive
    export MYSQL_USER=pannzer
    export MYSQL_DATABASE=pannzer
    export MYSQL_ROOT_PASSWORD=mysql

%post
	echo "Running post"
	
	mkdir /opt/GOMAP/
	git clone --branch=v1.1 https://github.com/Dill-PICL/GOMAP.git /opt/GOMAP/
	chmod -R 777 /opt/GOMAP/
	mkdir -p /workdir
	mkdir -p /tmpdir
	mkdir -p /var/log/mysql
    #mv my.cnf /etc/mysql/
	
	echo "Completed Post"  

%startscript
	chmod 777 /tmp
	nohup mysqld > /workdir/tmp/mysql.log 2> /workdir/tmp/mysql.err < /dev/null &

%runscript
	cd /opt/GOMAP/ 
	./gomap.py "$@"

Collection

• Name: Dill-PICL/GOMAP-singularity
• License: MIT License

Metrics

Feedback

Was this page helpful?

Glad to hear it! Please tell us how we can improve.

Sorry to hear that. Please tell us how we can improve.