Dill-PICL/GOMAP-singularity:v1.0.bridges

$ singularity pull shub://Dill-PICL/GOMAP-singularity:v1.0.bridges

Singularity Recipe

Bootstrap: shub 
From: Dill-PICL/GOMAP-base:bionic

%labels
MAINTAINER Kokulapalan Wimalanathan
Version 1.1.0
Branch PSC-Bridges

%files

%environment
    export LC_ALL=C 
    export DEBIAN_FRONTEND=noninteractive
    export MYSQL_USER=pannzer
    export MYSQL_DATABASE=pannzer
    export MYSQL_ROOT_PASSWORD=mysql 

%post
	echo "Running post"

    #Installing mpich
    wget http://www.mpich.org/static/downloads/3.2/mpich-3.2.tar.gz &&  \
    tar -xf  mpich-3.2.tar.gz && \
    cd mpich-3.2 &&  \
    ./configure && make -j4 && make install && \
    cd .. 
    
	pip install mpi4py==3.0.0  

	mkdir /opt/GOMAP/
	git clone --branch=v1.0 https://github.com/Dill-PICL/GOMAP.git /opt/GOMAP/
	chmod -R 777 /opt/GOMAP/
	mkdir -p /workdir
	mkdir -p /tmpdir
	mkdir -p /var/log/mysql
	

	echo "Completed Post"

%startscript
	chmod 777 /tmp
	nohup mysqld --user=$USER > /dev/null 2>&1 < /dev/null &

%runscript
	cd /opt/GOMAP/ 
	./gomap.py "$@"

Collection


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key value
id /containers/Dill-PICL-GOMAP-singularity-v1.0.bridges
collection name Dill-PICL/GOMAP-singularity
branch v1.0
tag v1.0.bridges
commit 12ebff9dcf792a500b1ebf6fb810c4b1c3920c34
version (container hash) 7e17b5bc75c6be10b5f60f7f26f79304
build date 2019-03-11T14:44:01.606Z
size (MB) 2511
size (bytes) 890863647
SIF Download URL (please use pull with shub://)
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Singularity Recipe Singularity Recipe on Datalad
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