Dill-PICL/GOMAP-singularity:condo
$ singularity pull shub://Dill-PICL/GOMAP-singularity:condo
Singularity Recipe
Bootstrap: shub
From: Dill-PICL/GOMAP-base:bionic
%labels
MAINTAINER Kokulapalan Wimalanathan
Version 1.1.0
Branch ISU-condo
%files
%environment
export LC_ALL=C
export DEBIAN_FRONTEND=noninteractive
export MYSQL_USER=pannzer
export MYSQL_DATABASE=pannzer
export MYSQL_ROOT_PASSWORD=mysql
%post
echo "Running post"
#Installing mpich
wget http://www.mpich.org/static/downloads/3.2.1/mpich-3.2.1.tar.gz && \
tar -xf mpich-3.2.1.tar.gz && \
cd mpich-3.2.1 && \
./configure && make -j4 && make install && \
cd ..
pip install mpi4py==3.0.0
mkdir /opt/GOMAP/
git clone --branch=master https://github.com/Dill-PICL/GOMAP.git /opt/GOMAP/
chmod -R 777 /opt/GOMAP/
mkdir -p /workdir
mkdir -p /tmpdir
mkdir -p /work
mkdir -p /scratch
mkdir -p /var/log/mysql
echo "Completed Post "
%startscript
nohup mysqld --user=$USER > /workdir/tmp/mysql.log 2> /workdir/tmp/mysql.err < /dev/null &
%runscript
cd /opt/GOMAP/
./gomap.py "$@"
Collection
- Name: Dill-PICL/GOMAP-singularity
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/Dill-PICL-GOMAP-singularity-condo |
collection name | Dill-PICL/GOMAP-singularity |
branch | master |
tag | condo |
commit | 624dc0da4ca3229e90f15531da31ad1a89131202 |
version (container hash) | 9fdf2610efd3355dddf5182adbf8eab9 |
build date | 2019-02-17T21:45:23.945Z |
size (MB) | 1985 |
size (bytes) | 707297311 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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