DaleDupont/singularity-ga4gh:latest
$ singularity pull shub://DaleDupont/singularity-ga4gh:latest
Singularity Recipe
# bootstrap from docker ubuntu image
BootStrap: docker
From: ubuntu:latest
%post
apt-get update --fix-missing
apt-get install -y tar git curl libcurl4-openssl-dev wget dialog \
net-tools build-essential python python-dev python-distribute \
python-pip zlib1g-dev libxslt1-dev libffi-dev libssl-dev
mkdir -p /srv/ga4gh-server
git clone -b auth-deploy-stable-test https://github.com/Bio-Core/ga4gh-server.git /srv/ga4gh-server
# install python package requirements
pip install -r /srv/ga4gh-server/requirements.txt
pip install /srv/ga4gh-server
# prepare sample/compliance data
cd /srv/ga4gh-server/scripts
python prepare_compliance_data.py -o /srv/ga4gh-compliance-data
%runscript
exec ga4gh_server -P "${GA4GH_PORT}" -H "${GA4GH_IP}" -f "${GA4GH_CONFIG}"
Collection
- Name: DaleDupont/singularity-ga4gh
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/DaleDupont-singularity-ga4gh-latest |
collection name | DaleDupont/singularity-ga4gh |
branch | master |
tag | latest |
commit | bd21698426091821771d9f3a1049bf520a5f7b6f |
version (container hash) | 8ccdb43121fbb9954c89947011d2830e |
build date | 2017-12-19T06:40:02.490Z |
size (MB) | 843 |
size (bytes) | 330870815 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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