ComputationalProteomics/OmicLoupe:latest
$ singularity pull shub://ComputationalProteomics/OmicLoupe:latest
Singularity Recipe
BootStrap: docker
From: ubuntu:18.04
# Build: sudo singularity build out.simg Singularity
# Build: sudo writable: singularity build --writable out.sim Singularity
# Update: 200713
%post
R_BASE_VERSION="3.6.3"
# Setup system packages
apt-get -qq update
apt-get upgrade -y
apt-get install -y \
apt-transport-https \
gnupg \
ca-certificates \
libc6 \
libcurl4-openssl-dev \
libxml2-dev \
libfftw3-dev \
git \
wget \
zip \
libssl-dev \
vim-tiny \
libglu1-mesa-dev \
locales \
locales-all \
libudunits2-dev
locale-gen en_US.UTF-8
export LANG=en_US.UTF-8
export LANGUAGE=en_US.UTF-8
export LC_ALL=en_US.UTF-8
export LC_MONETARY=en_US.UTF-8
export LC_PAPER=en_US.UTF-8
export LC_MEASUREMENT=en_US.UTF-8
export LC_TIME=en_US.UTF-8
# Setup R repository
echo "deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/" >> /etc/apt/sources.list
apt-key adv --keyserver keyserver.ubuntu.com --recv-keys 51716619E084DAB9
# apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
apt-get -qq update
apt-get upgrade -y
# Install R
apt-get install -y --no-install-recommends \
littler \
r-base-core=${R_BASE_DEV}* \
r-base-dev=${R_BASE_DEV}*
# Prepare R repositories
echo 'options(repos = c(CRAN = "https://cran.rstudio.com/"), download.file.method = "libcurl")' >> /etc/R/Rprofile.site
echo 'source("/etc/R/Rprofile.site")' >> /etc/littler.r
# Rscript /etc/little.r
echo 'devtools::install_github("ComputationalProteomics/OmicLoupe")' >> install_omicloupe.R
# Rscript install_omicloupe.R
echo 'OmicLoupe::runApp()' > run.R
%runscript
exec Rscript /run.R
Collection
- Name: ComputationalProteomics/OmicLoupe
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/ComputationalProteomics-OmicLoupe-latest |
collection name | ComputationalProteomics/OmicLoupe |
branch | master |
tag | latest |
commit | e61349a5a5110f6274809069b32c3d5758437079 |
version (container hash) | f66cee24ceb1c4346c427766a2e5630a |
build date | 2021-01-22T11:04:57.358Z |
size (MB) | 921.0 |
size (bytes) | 324546591 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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