CompBio-TDU-Japan/containers:vcftools

$ singularity pull shub://CompBio-TDU-Japan/containers:vcftools

Singularity Recipe

Bootstrap: docker
FROM: alpine

%post
    apk add --update --no-cache perl bash bzip2-dev xz-dev libstdc++
    apk add --update --no-cache --virtual build-deps autoconf automake libtool git build-base zlib-dev
    git clone https://github.com/vcftools/vcftools.git
    git clone https://github.com/samtools/htslib.git
    git clone https://github.com/biosugar0/refmaker.git
    mv refmaker/refmaker /usr/local/bin/
    rm -rf refmaker
    cd /htslib
    autoheader
    autoconf
    ./configure
    make
    make install
    cd /vcftools
    ./autogen.sh
    ./configure
    make
    make install
    apk del build-deps
    cd ; rm -rf /htslib /vcftools

%apprun vcf-consensus
    vcf-consensus "$@"

%apprun tabix
    tabix "$@"

%labels
    Version v0.5

Collection


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Metrics

key value
id /containers/CompBio-TDU-Japan-containers-vcftools
collection name CompBio-TDU-Japan/containers
branch master
tag vcftools
commit 144df7beaa207eb20e0784ee42f833e65ffdf2f9
version (container hash) c4e75bb53240da2a1d423a8195494e79
build date 2020-06-26T10:26:31.950Z
size (MB) 80
size (bytes) 22085663
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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