CompBio-TDU-Japan/containers:vcftools
$ singularity pull shub://CompBio-TDU-Japan/containers:vcftools
Singularity Recipe
Bootstrap: docker
FROM: alpine
%post
apk add --update --no-cache perl bash bzip2-dev xz-dev libstdc++
apk add --update --no-cache --virtual build-deps autoconf automake libtool git build-base zlib-dev
git clone https://github.com/vcftools/vcftools.git
git clone https://github.com/samtools/htslib.git
git clone https://github.com/biosugar0/refmaker.git
mv refmaker/refmaker /usr/local/bin/
rm -rf refmaker
cd /htslib
autoheader
autoconf
./configure
make
make install
cd /vcftools
./autogen.sh
./configure
make
make install
apk del build-deps
cd ; rm -rf /htslib /vcftools
%apprun vcf-consensus
vcf-consensus "$@"
%apprun tabix
tabix "$@"
%labels
Version v0.5
Collection
- Name: CompBio-TDU-Japan/containers
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/CompBio-TDU-Japan-containers-vcftools |
collection name | CompBio-TDU-Japan/containers |
branch | master |
tag | vcftools |
commit | 144df7beaa207eb20e0784ee42f833e65ffdf2f9 |
version (container hash) | c4e75bb53240da2a1d423a8195494e79 |
build date | 2020-06-26T10:26:31.950Z |
size (MB) | 80 |
size (bytes) | 22085663 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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