CompBio-TDU-Japan/containers:snpeff

$ singularity pull shub://CompBio-TDU-Japan/containers:snpeff

Singularity Recipe

Bootstrap: docker
FROM: openjdk:alpine

%post
    apk --update --no-cache add bash
    wget https://jaist.dl.sourceforge.net/project/snpeff/snpEff_latest_core.zip
    unzip snpEff_latest_core.zip
    rm -rf snpEff_latest_core.zip
    sed -i "s/.\/data\/$/~\/\.snpEff\/data/g" /snpEff/snpEff.config

%runscript
    /snpEff/scripts/snpEff "$@"

Collection


View on Datalad

Metrics

key value
id /containers/CompBio-TDU-Japan-containers-snpeff
collection name CompBio-TDU-Japan/containers
branch master
tag snpeff
commit 68ea77101b3b0fd5937328277b74e69fcc0a9746
version (container hash) bce05d30cf40b4624a1adc63d157ab36
build date 2018-03-27T03:22:06.198Z
size (MB) 264
size (bytes) 143441951
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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