CompBio-TDU-Japan/containers:samtools

$ singularity pull shub://CompBio-TDU-Japan/containers:samtools

Singularity Recipe

Bootstrap: docker
FROM: alpine

%post
    apk add --update --no-cache bash ncurses bzip2-dev xz-dev
    apk --nocache add --virtual build-deps build-base build-base zlib-dev ncurses-dev musl-dev libcurl curl
    wget https://github.com/samtools/samtools/releases/download/1.7/samtools-1.7.tar.bz2
    tar xf samtools-1.7.tar.bz2
    rm -rf samtools-1.7.tar.bz2
    cd samtools-1.7
    ./configure
    make
    make install
    cd ;apk del build-deps
    rm -rf /samtools-1.7
%runscript
    samtools "$@"

Collection


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Metrics

key value
id /containers/CompBio-TDU-Japan-containers-samtools
collection name CompBio-TDU-Japan/containers
branch master
tag samtools
commit 58478a9f251d425fc6f576e300ac0cf22907274b
version (container hash) 3e8ea3d658ca24ee6e9424a3b7dbd5c7
build date 2021-03-10T22:36:11.933Z
size (MB) 22
size (bytes) 6787103
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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