CompBio-TDU-Japan/containers:gatk

$ singularity pull shub://CompBio-TDU-Japan/containers:gatk

Singularity Recipe

Bootstrap: docker
FROM: broadinstitute/gatk:gatkbase-2.0.2

%post
    apt-get clean -y
    apt-get autoclean -y
    apt-get autoremove -y
    VERSION=4.0.12.0
    export JAVA_HOME=/usr/lib/jvm/java-1.8-openjdk
    wget https://github.com/broadinstitute/gatk/releases/download/$VERSION/gatk-$VERSION.zip
    unzip gatk-$VERSION.zip
    rm -f gatk-$VERSION.zip
    mv gatk-$VERSION /data/
    rm -r /data/gatkdoc
    ulimit -c unlimited

Collection


View on Datalad

Metrics

key value
id /containers/CompBio-TDU-Japan-containers-gatk
collection name CompBio-TDU-Japan/containers
branch master
tag gatk
commit 076f50dcb4ec55d1c08ed1905e101579b20a46b1
version (container hash) 4ce8f549c4d9f59b92f0c52d13466be5
build date 2019-01-21T15:26:39.030Z
size (MB) 1617
size (bytes) 793116703
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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