CompBio-TDU-Japan/containers:gatk
$ singularity pull shub://CompBio-TDU-Japan/containers:gatk
Singularity Recipe
Bootstrap: docker
FROM: broadinstitute/gatk:gatkbase-2.0.2
%post
apt-get clean -y
apt-get autoclean -y
apt-get autoremove -y
VERSION=4.0.12.0
export JAVA_HOME=/usr/lib/jvm/java-1.8-openjdk
wget https://github.com/broadinstitute/gatk/releases/download/$VERSION/gatk-$VERSION.zip
unzip gatk-$VERSION.zip
rm -f gatk-$VERSION.zip
mv gatk-$VERSION /data/
rm -r /data/gatkdoc
ulimit -c unlimited
Collection
- Name: CompBio-TDU-Japan/containers
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/CompBio-TDU-Japan-containers-gatk |
collection name | CompBio-TDU-Japan/containers |
branch | master |
tag | gatk |
commit | 076f50dcb4ec55d1c08ed1905e101579b20a46b1 |
version (container hash) | 4ce8f549c4d9f59b92f0c52d13466be5 |
build date | 2019-01-21T15:26:39.030Z |
size (MB) | 1617 |
size (bytes) | 793116703 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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