CompBio-TDU-Japan/containers:cufflinks
$ singularity pull shub://CompBio-TDU-Japan/containers:cufflinks
Singularity Recipe
Bootstrap:docker
From:alpine
%post
apk add --update --no-cache --virtual build-deps build-base ca-certificates wget
apk --no-cache add bash python-dev python
wget -q -O /etc/apk/keys/sgerrand.rsa.pub https://alpine-pkgs.sgerrand.com/sgerrand.rsa.pub
wget https://github.com/sgerrand/alpine-pkg-glibc/releases/download/2.28-r0/glibc-2.28-r0.apk
wget https://github.com/sgerrand/alpine-pkg-glibc/releases/download/2.28-r0/glibc-bin-2.28-r0.apk
apk add --nocache glibc-2.28-r0.apk
apk add --nocache glibc-bin-2.28-r0.apk
rm glibc*.apk
wget http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/cufflinks-2.2.1.Linux_x86_64.tar.gz
tar -zxvf cufflinks-2.2.1.Linux_x86_64.tar.gz
mv cufflinks-2.2.1.Linux_x86_64/cuff* /usr/local/bin/
mv cufflinks-2.2.1.Linux_x86_64/g* /usr/local/bin/
rm cufflinks-2.2.1.Linux_x86_64.tar.gz
rm -r cufflinks-2.2.1.Linux_x86_64
rm "/etc/apk/keys/sgerrand.rsa.pub"
rm -rf /usr/glibc-compat/bin
apk del build-deps
Collection
- Name: CompBio-TDU-Japan/containers
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/CompBio-TDU-Japan-containers-cufflinks |
collection name | CompBio-TDU-Japan/containers |
branch | master |
tag | cufflinks |
commit | 58478a9f251d425fc6f576e300ac0cf22907274b |
version (container hash) | 9d0449c1e0b921af0e013dc37f7719a1 |
build date | 2018-11-16T10:50:05.387Z |
size (MB) | 232 |
size (bytes) | 71061535 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.