CompBio-TDU-Japan/containers:cufflinks

$ singularity pull shub://CompBio-TDU-Japan/containers:cufflinks

Singularity Recipe

Bootstrap:docker
From:alpine

%post
    apk add --update --no-cache --virtual build-deps build-base ca-certificates wget
    apk --no-cache add bash python-dev python 
    wget -q -O /etc/apk/keys/sgerrand.rsa.pub https://alpine-pkgs.sgerrand.com/sgerrand.rsa.pub
    wget https://github.com/sgerrand/alpine-pkg-glibc/releases/download/2.28-r0/glibc-2.28-r0.apk
    wget https://github.com/sgerrand/alpine-pkg-glibc/releases/download/2.28-r0/glibc-bin-2.28-r0.apk
    apk add --nocache glibc-2.28-r0.apk
    apk add --nocache glibc-bin-2.28-r0.apk
    rm glibc*.apk
    wget http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/cufflinks-2.2.1.Linux_x86_64.tar.gz
    tar -zxvf cufflinks-2.2.1.Linux_x86_64.tar.gz
    mv cufflinks-2.2.1.Linux_x86_64/cuff* /usr/local/bin/
    mv cufflinks-2.2.1.Linux_x86_64/g* /usr/local/bin/
    rm cufflinks-2.2.1.Linux_x86_64.tar.gz
    rm -r cufflinks-2.2.1.Linux_x86_64
    rm "/etc/apk/keys/sgerrand.rsa.pub"
    rm -rf /usr/glibc-compat/bin
    apk del build-deps

Collection


View on Datalad

Metrics

key value
id /containers/CompBio-TDU-Japan-containers-cufflinks
collection name CompBio-TDU-Japan/containers
branch master
tag cufflinks
commit 58478a9f251d425fc6f576e300ac0cf22907274b
version (container hash) 9d0449c1e0b921af0e013dc37f7719a1
build date 2018-11-16T10:50:05.387Z
size (MB) 232
size (bytes) 71061535
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.