CompBio-TDU-Japan/containers:blast-latest

$ singularity pull shub://CompBio-TDU-Japan/containers:blast-latest

Singularity Recipe

Bootstrap: docker
FROM: alpine

%post
    VERSION=2.7.1
    apk --update --no-cache add --virtual=.build-deps ca-certificates wget
    apk --no-cache add bash libbz2 libidn
    wget -q -O /etc/apk/keys/sgerrand.rsa.pub https://alpine-pkgs.sgerrand.com/sgerrand.rsa.pub
    wget https://github.com/sgerrand/alpine-pkg-glibc/releases/download/2.28-r0/glibc-2.28-r0.apk
    wget https://github.com/sgerrand/alpine-pkg-glibc/releases/download/2.28-r0/glibc-bin-2.28-r0.apk
    apk add --nocache glibc-2.28-r0.apk
    apk add --nocache glibc-bin-2.28-r0.apk
    wget https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${VERSION}/ncbi-blast-${VERSION}+-x64-linux.tar.gz
    tar xfvz ncbi-blast-${VERSION}+-x64-linux.tar.gz
    mv ncbi-blast-${VERSION}+/bin/* /usr/local/bin/
    rm glibc*.apk
    rm "/root/.wget-hsts"
    rm ncbi-blast-${VERSION}+-x64-linux.tar.gz
    rm -r ncbi-blast-${VERSION}+
    rm "/etc/apk/keys/sgerrand.rsa.pub"
    apk del .build-deps
    rm -r /usr/glibc-compat/bin
    rm -r /usr/glibc-compat/sbin

Collection


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Metrics

key value
id /containers/CompBio-TDU-Japan-containers-blast-latest
collection name CompBio-TDU-Japan/containers
branch master
tag blast-latest
commit 1b7d007008caa2a8838890a045b3e8ce5726612b
version (container hash) 23e995c85e7c219584b89f0896c33183
build date 2019-09-30T15:16:38.653Z
size (MB) 701
size (bytes) 245792799
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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