Characterisation-Virtual-Laboratory/CharacterisationVL-Software:libertem-21-may-2019
$ singularity pull shub://Characterisation-Virtual-Laboratory/CharacterisationVL-Software:libertem-21-may-2019
Singularity Recipe
Bootstrap: shub
From: Characterisation-Virtual-Laboratory/CharacterisationVL-Software:1804-cuda9
%labels
MAINTAINER_NAME Jay van Schyndel
MAINTAINER_EMAIL jay.vanschyndel@monash.edu
APPLICATION_NAME ubuntu
APPLICATION_VERSION 18.04
HARDWARE GPU
LAST_UPDATED 22-MAY-2019
%environment
%post -c /bin/bash
echo "*********************************************************"
echo "Setup and display environment"
echo "*********************************************************"
export LC_ALL=en_AU.UTF-8
export LANGUAGE=en_AU.UTF-8
export DEBIAN_FRONTEND=noninteractive
echo $LC_ALL
echo $LANGUAGE
echo $DEBIAN_FRONTEND
echo "*********************************************************"
echo "Install repositories"
echo "*********************************************************"
apt-get install -y software-properties-common
apt-add-repository -y 'deb http://us.archive.ubuntu.com/ubuntu/ bionic main restricted'
apt-add-repository -y 'deb http://us.archive.ubuntu.com/ubuntu/ bionic-updates main restricted'
apt-add-repository -y 'deb http://us.archive.ubuntu.com/ubuntu/ bionic universe'
apt-add-repository -y 'deb http://us.archive.ubuntu.com/ubuntu/ bionic-updates universe'
echo "*********************************************************"
echo "Update repositories and install desktop"
echo "*********************************************************"
apt update
apt upgrade -y
apt install -y locales
locale-gen en_AU.UTF-8
echo "########################################"
echo "# Installing liberTEM - 21-May-2019 #"
echo "########################################"
#echo "Installing dependencies"
apt install -y python3-venv python3-pip
cd /opt
#git clone -b v0.1.0 https://github.com/LiberTEM/LiberTEM.git
#Using this version of LiberTEM as it contains a fix to run in a container.
# A pull request for Issue80 fix as been submitted to LiberTEM.
git clone -b issue80 https://github.com/ozej8y/LiberTEM.git
cd LiberTEM
pip3 install -e .[torch]
%runscript
$*
Collection
- Name: Characterisation-Virtual-Laboratory/CharacterisationVL-Software
- License: GNU General Public License v3.0
View on Datalad
Metrics
key | value |
---|---|
id | /containers/Characterisation-Virtual-Laboratory-CharacterisationVL-Software-libertem-21-may-2019 |
collection name | Characterisation-Virtual-Laboratory/CharacterisationVL-Software |
branch | master |
tag | libertem-21-may-2019 |
commit | a1ea471b6338fbea4d5627014073e0be50be9619 |
version (container hash) | c4e10f5f60153456d4a7ee6b4c6110ed |
build date | 2020-09-16T23:48:54.018Z |
size (MB) | 8687 |
size (bytes) | 4660187167 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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