Characterisation-Virtual-Laboratory/CharacterisationVL-Software:cryolo_v1_0_0

$ singularity pull shub://Characterisation-Virtual-Laboratory/CharacterisationVL-Software:cryolo_v1_0_0

Singularity Recipe

BootStrap: debootstrap
OSVersion: xenial
MirrorURL: http://au.archive.ubuntu.com/ubuntu/

%labels
MAINTAINER lance.wilson@monash.edu
HARDWARE gpu


%runscript
    echo "This is what happens when you run the container..."


%post
    echo "*********************************************************"
    echo "Setup and display environment"
    echo "*********************************************************"
    export LC_ALL=en_AU.UTF-8
    export LANGUAGE=en_AU.UTF-8
    export DEBIAN_FRONTEND=noninteractive
    echo $LC_ALL
    echo $LANGUAGE
    echo $DEBIAN_FRONTEND
    echo "*********************************************************"
    echo "Install repositories"
    echo "*********************************************************"
    sed -i 's/main/main restricted universe multiverse/g' /etc/apt/sources.list
    echo "deb http://developer.download.nvidia.com/compute/cuda/repos/ubuntu1604/x86_64 /" > /etc/apt/sources.list.d/cuda.list
    apt-key adv --fetch-keys http://developer.download.nvidia.com/compute/cuda/repos/ubuntu1604/x86_64/7fa2af80.pub
    echo "*********************************************************"
    echo "Update repositories and install desktop"
    echo "*********************************************************"
    apt update
    apt upgrade -y
    apt install -y locales
    locale-gen en_AU.UTF-8
    apt install -y wget ubuntu-desktop vim software-properties-common git cmake 
    echo "*********************************************************"
    echo "Installing CUDA"
    echo "*********************************************************"
    apt install -y cuda-9-0
    echo "*********************************************************"
    echo "Installing python dependencies"
    echo "*********************************************************"
    apt install -y python-pip python-pyqt5 pyqt5-dev python-tk
    echo "*********************************************************"
    echo "Installing software"
    echo "*********************************************************"
    wget ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_0/cryolo-1.0.0.tar.gz 
    wget ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_0/cryoloBM-1.0.0.tar.gz
    wget ftp://ftp.gwdg.de/pub/misc/sphire/crYOLO_V1_0_0/gmodel_cryolo_20180621_0734_loss_0102.h5
    pip install numpy
    pip install cryolo-1.0.0.tar.gz
    pip install cryoloBM-1.0.0.tar.gz

Collection

• Name: Characterisation-Virtual-Laboratory/CharacterisationVL-Software
• License: GNU General Public License v3.0

Metrics

Feedback

Was this page helpful?

Glad to hear it! Please tell us how we can improve.

Sorry to hear that. Please tell us how we can improve.