Characterisation-Virtual-Laboratory/CharacterisationVL-Software:crisprcas
$ singularity pull shub://Characterisation-Virtual-Laboratory/CharacterisationVL-Software:crisprcas
Singularity Recipe
Bootstrap: shub
From: Characterisation-Virtual-Laboratory/CharacterisationVL-Software:1804
%labels
MAINTAINER_NAME Jay van Schyndel
MAINTAINER_EMAIL jay.vanschyndel@monash.edu
APPLICATION_NAME ubuntu
APPLICATION_VERSION 18.04
HARDWARE CPU
LAST_UPDATED 26-APR-2019
%environment
VIEWER_PATH=/opt/CRISPRCasViewer
FINDER_PATH=/opt/CRISPRCasFinder/bin
export PATH=$VIEWER_PATH:$FINDER_PATH:$PATH
%post
echo "*********************************************************"
echo "Setup and display environment"
echo "*********************************************************"
export LC_ALL=en_AU.UTF-8
export LANGUAGE=en_AU.UTF-8
export DEBIAN_FRONTEND=noninteractive
echo $LC_ALL
echo $LANGUAGE
echo $DEBIAN_FRONTEND
echo "*********************************************************"
echo "Install repositories"
echo "*********************************************************"
apt-get install -y software-properties-common
apt-add-repository -y 'deb http://us.archive.ubuntu.com/ubuntu/ bionic main restricted'
apt-add-repository -y 'deb http://us.archive.ubuntu.com/ubuntu/ bionic-updates main restricted'
apt-add-repository -y 'deb http://us.archive.ubuntu.com/ubuntu/ bionic universe'
apt-add-repository -y 'deb http://us.archive.ubuntu.com/ubuntu/ bionic-updates universe'
echo "*********************************************************"
echo "Update repositories and install desktop"
echo "*********************************************************"
apt update
apt upgrade -y
apt install -y locales apt-utils
locale-gen en_AU.UTF-8
echo "================================="
echo " Installing CRISPRCasFinder "
echo "================================="
cd /opt
wget -O CRISPRCasFinder.zip https://crisprcas.i2bc.paris-saclay.fr/Home/DownloadFile?filename=CRISPRCasFinder.zip
unzip CRISPRCasFinder.zip
cd CRISPRCasFinder
./installer_UBUNTU.sh
#Note: Following came from install script. Added to resolve issues with Perl script.
cp /opt/CRISPRCasFinder/src/vmatch-2.3.0-Linux_x86_64-64bit/vmatch /opt/CRISPRCasFinder/bin/vmatch2
cp /opt/CRISPRCasFinder/src/vmatch-2.3.0-Linux_x86_64-64bit/mkvtree /opt/CRISPRCasFinder/bin/mkvtree2
cp /opt/CRISPRCasFinder/src/vmatch-2.3.0-Linux_x86_64-64bit/vsubseqselect /opt/CRISPRCasFinder/bin/vsubseqselect2
echo "================================="
echo " Installing CRISPRCasViewer "
echo "================================="
cd /opt
wget -O CRISPRCasViewer.zip https://crisprcas.i2bc.paris-saclay.fr/Home/DownloadFile?filename=CRISPRCasViewer.zip
unzip CRISPRCasViewer.zip
chmod -R g+rx,o+rx CRISPRCasViewer
%runscript
$*
Collection
- Name: Characterisation-Virtual-Laboratory/CharacterisationVL-Software
- License: GNU General Public License v3.0
View on Datalad
Metrics
key | value |
---|---|
id | /containers/Characterisation-Virtual-Laboratory-CharacterisationVL-Software-crisprcas |
collection name | Characterisation-Virtual-Laboratory/CharacterisationVL-Software |
branch | master |
tag | crisprcas |
commit | a4a84554049a0f8f6b26b896c36795895eafa287 |
version (container hash) | 1747ee596ed819d2cc99376911a2c189 |
build date | 2020-09-16T23:54:02.552Z |
size (MB) | 4692 |
size (bytes) | 1922924575 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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